FC920770

Overview
NameFC920770
Unique NameFC920770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13387 contig Ccv1_Contig13387:377..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 49/148 (33.11%), Postives = 85/148 (57.43%), Query Frame = 2
Query:  221 AYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            A +G+  G   +N+P A++++A+ +AN I  +RLYD +   L AL  SGIE+I+G+ N ++  +         W+ +NV  + P+  I  IAVG++V  +      A  ++ A  N+++A+ A  L+ Q+K++T   M +I   FPPS
Sbjct:   32 AQIGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPS 179          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 56/172 (32.56%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  155 MLVKWLGSVVFLAIGLFTNV--LGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            M    +  +V L + + TN+    A +GV  G   +N+PS S+++ + ++  I  +RLYD +   L AL  S IEVI+G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T   +  S  V A+ N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:    1 MATSQIAVIVLLGLLVATNIHITEAQLGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPS 172          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 49/161 (30.43%), Postives = 91/161 (56.52%), Query Frame = 2
Query:  179 VVFLAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVL-TSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            ++ L + L   + G  VG+N G   +N+PS + +  +LR+  IT V+LYDAD ++L + S S ++ ++G+ NE +  +         W+ + +  ++  T IT+I VG+++  T+       L+ AM +++ AL    L  QV +++ HS+DI+   +PPS
Sbjct:   13 LLLLFLTLSERIKGQGVGINYGQIANNLPSPARVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPS 173          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 54/149 (36.24%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  215 LGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLN-EEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GA  GV  G    N+PS SD+V + ++  I  +R+Y+ D   L AL  SGI +I+ V   +EV  +G        W+  NV AY P   I  IAVG++V         +++ AM N+H AL +++L+  +K+ST    D+I   FPPS
Sbjct:    1 MGAVHGVCYGMVGDNLPSRSDVVQLYKSRNIHAMRIYNPDQEALTALRGSGIFLILDVGGVDEVRRLGRDPSYAAGWVRSNVQAYYPDVLIRYIAVGNEVPA---GDTGIILLAMQNVHNALASANLSSSIKVSTAVRFDVITNSFPPS 146          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 52/154 (33.77%), Postives = 83/154 (53.90%), Query Frame = 2
Query:  206 TNVLGAY-VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            T ++GA  VGV  G   +N+P AS +V + ++  I  +RLYD +   L+AL  S IEV++GV N ++  I         W+ +NV  + P      IAVG++V  +T   +    L+ AM N+  A+ ++ L   +K+S+   M +I   FPPS
Sbjct:   25 TEIVGAQSVGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPS 178          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  188 LAIGLFTNVLGAY--VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            L IG F  V  +   +GV  G   +N+PS SD+V + R+  I  +R+Y AD   L AL  SGI +I+ + N+++  I         W+  NV  Y P  NI  IA G++V      A   ++ AM NL+ AL A+ L   +K+ST    D +   FPPS
Sbjct:   14 LFIGAFAAVPTSVQSIGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQ---GGATQSILPAMRNLNAALSAAGLG-AIKVSTSIRFDEVANSFPPS 168          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 2
Query:  149 QMMLVKWLGSVVFLAIGLFTNVLGAY-VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            QM  +  LG    L +    ++ GA  +GV  G   +N+P+  +++ + ++  I  +RLYD +   L+AL  S IEV++G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T      S L  AM N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:   11 QMAAITLLG---LLLVASSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPS 180          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 2
Query:  149 QMMLVKWLGSVVFLAIGLFTNVLGAY-VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            QM  +  LG    L +    ++ GA  +GV  G   +N+P+  +++ + ++  I  +RLYD +   L+AL  S IEV++G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T      S L  AM N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:   12 QMAAITLLG---LLLVASSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPS 181          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GV  G   +N+PS S+++ + ++  I  +RLYD +   L AL  S IEVI+G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T   +  S  V A+ N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:    1 LGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPS 146          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 55/173 (31.79%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  149 QMMLVKWLGSVVFLAIGLFTNVLGAY-VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            QM  +  LG    L +     + GA  +GV  G   +N+P+  +++ + ++  I  +RLYD +   L+AL  S IEV++G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T      S L  AM N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:   11 QMAAITLLG---LLLVASTIEIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPS 180          
The following BLAST results are available for this feature:
BLAST of FC920770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
E13B_PEA1.846e-1833.11Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E132_SOLTU2.411e-1832.56Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E1314_ARATH2.411e-1830.43Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E13E_HORVU4.112e-1836.24Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
GUB_NICPL1.197e-1733.77Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13B_HORVU3.481e-1735.85Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13E_TOBAC5.938e-1731.79Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC5.938e-1731.79Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E131_SOLTU5.938e-1734.25Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13F_TOBAC7.756e-1731.79Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]

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Properties
Property NameValue
Genbank descriptionC32012G12EF RVDevelop1 Citrus clementina cDNA clone C32012G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920770 ID=FC920770; Name=FC920770; organism=Citrus clementina; type=EST; length=694bp
GGAGCTCAGGCAATTTGGATCTCGCAGGACCTTGCAGTCAGCTATTGGCA
TCAAATTCCATTTTTGTGTGTTTCTGGAAGCTTTGGCAGTCTGATCTCCA
TCTTGGAGTAATTGACTGGACTGAAGGTGTAGGTTAAAGTTTGTTGGACA
GATGATGCTTGTAAAATGGCTTGGAAGTGTGGTTTTTCTTGCAATTGGCC
TCTTTACCAACGTGTTAGGTGCATATGTTGGTGTAAACATCGGAACAGAT
GTTTCCAACATGCCATCAGCTTCAGATATTGTTGCAATACTTAGAGCCAA
TCAAATTACTCACGTACGCCTTTATGACGCTGACAGTCACATGCTGAAAG
CCCTTTCAAAGAGTGGAATTGAGGTAATTGTTGGTGTACTGAATGAGGAA
GTCTTGGGTATTGGAGAATCTGCATCAGCTGCAGCAGCCTGGATTAATAA
AAATGTTGCTGCGTACATGCCTACAACTAATATTACAGCCATTGCGGTTG
GCAGTCAGGTTCTTACCTCAATCCCTAATGCTGCCTCAGTTTTGGTGTCG
GCCATGAATAACCTTCATAAAGCTCTAGTTGCTTCAGATCTAAATTTCCA
AGTCAAAATTTCAACTCCACACTCCATGGATATAATCCCAAGGCCATTCC
CCCCTTCACCGCTACATTTAATCTGCATGGAACTCTACATTTAT
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