FC920770

Overview
NameFC920770
Unique NameFC920770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 49/157 (31.21%), Postives = 73/157 (46.50%), Query Frame = 2
Query:  188 LAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            L I  F N     +GV  G     +PS SD+VA+ +   I  +RLY  D   L AL  S IE+I+ V + ++  +         W+ +NV +Y        I VG++V    P+    L+ AM N+  A+  S    +VK+ST  + D      PPS
Sbjct:   19 LVIASFFNHTAGQIGVCYGMLGDTLPSPSDVVALYKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVK---PSVGGFLLQAMQNIENAV--SGAGLEVKVSTAIATDTTTDTSPPS 170          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GV  G +  N+P ASD+V + ++N I  +R+Y  D++ L ALS + I +I+ V N ++  +         W+  NV A   +     IAVG++V  S  +  S+L  AM NL+ AL  + L   +K+ST    D + + FPPS
Sbjct:   30 IGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANPLNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNVQASRRSA-CRYIAVGNEV--SGGDTGSIL-PAMQNLNAALANAGLGGSIKVSTAVQSD-VTQGFPPS 168          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  314 VRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNA--ASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +R+YD +S  L+AL  SGIE+I+ V N  +  +         W+  NV  Y        IAVG++VL +  NA  A  ++ AM N+  A+ ++ L  Q+K+ST     ++   +PPS
Sbjct:    1 MRIYDPNSDTLQALKGSGIELILDVPNTSLQSLASDASAASTWVQNNVVNYASDVKFRYIAVGNEVLPTGSNAQYAQYVLPAMKNVQSAITSAGLQGQIKVSTATYSSVLGTSYPPS 117          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GV  G   +N+P+ S++VA+ +   I  +R+Y  +   L AL  S IE I+ V N ++  + +       W+  NV  Y        I+VG++V    P AA+ L+ AM N+ +AL A+ L+  +K+ST   M      +PPS
Sbjct:   27 IGVCFGQMGNNIPNPSEVVAMFKQYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQKY-NDVRFKYISVGNEVKPGEPGAAA-LIQAMQNIDRALSAAGLS-NIKVSTTTFMGPSRNTYPPS 167          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 49/164 (29.88%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  182 VFLAIGLFTNVLGAY-----VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            V +A+ L    L A+     +GV  G   +N+P+ SD+V + R+ +I  +R+Y+ +S +L ALS +GI V++ V    +  +         W+  NV+++ P  +   IAV ++V+ S     S ++ AM N+ +AL A+     +K+ST    D+     PPS
Sbjct:    6 VDVAVALVLVALAAFPAVHSIGVCNGVLGNNLPAPSDVVTLYRSKRIDAMRIYEPESKVLTALSGTGIAVLMDV-GPALPSLASSPSAAAAWVKANVSSF-PGVSFRYIAVRNEVMDSA--GQSTILPAMRNVQRALAAA--GSPIKVSTSVRFDVFNNTSPPS 163          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 42/143 (29.37%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  224 YVGVNIGTDVSNMPSASDIVAILRANQ-ITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXX---WINKNVAAYMPTTNITAIAVGSQVLTSI-PNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDII 637
            ++GVN G +  N+PS + +   L     I  V+L+DA+   + A + + I + V + N  +  + +          WI  N++ Y+P TN+T +  G+++L S   N    L+ AM  L +AL A  L   V+++TPH + I+
Sbjct:   25 HIGVNYGANADNLPSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGLT-GVRVTTPHYLGIL 166          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  155 MLVKWLGSVVFLA-IGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYM--PTTNITAIAVGSQVLTSIPNAASVLVS--AMNNLHKALVASDLNFQVKISTPHSMDIIPRP 646
            +L   +G V+ +  +G+  N LG    VN GT  ++      +V +L+ N I  V+L+DAD   + AL+ SG+EV+V + N++ L +         W+ KNV  Y      NIT +AVG++      N + + ++  A+ N+  AL  + L   VK + P + D+   P
Sbjct:    4 LLALVVGFVIVIGHLGILVNGLG----VNWGTMATHKLPPKTVVQMLKDNNINKVKLFDADETTMGALAGSGLEVMVAIPNDQ-LKVMTSYDRAKDWVRKNVTRYNFDGGVNITFVAVGNEPFLKSYNGSFINLTFPALANIQNALNEAGLGNSVKATVPLNADVYDSP 167          
The following BLAST results are available for this feature:
BLAST of FC920770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
E13A_ARATH1.159e-1231.21Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_MAIZE5.752e-1234.03Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_VITVI9.811e-1233.33Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13B_BRACM9.811e-1231.94Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13C_HORVU1.674e-1129.88Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13B_WHEAT1.674e-1129.37Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E138_ARATH1.674e-1130.18Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012G12EF RVDevelop1 Citrus clementina cDNA clone C32012G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920770 ID=FC920770; Name=FC920770; organism=Citrus clementina; type=EST; length=694bp
GGAGCTCAGGCAATTTGGATCTCGCAGGACCTTGCAGTCAGCTATTGGCA
TCAAATTCCATTTTTGTGTGTTTCTGGAAGCTTTGGCAGTCTGATCTCCA
TCTTGGAGTAATTGACTGGACTGAAGGTGTAGGTTAAAGTTTGTTGGACA
GATGATGCTTGTAAAATGGCTTGGAAGTGTGGTTTTTCTTGCAATTGGCC
TCTTTACCAACGTGTTAGGTGCATATGTTGGTGTAAACATCGGAACAGAT
GTTTCCAACATGCCATCAGCTTCAGATATTGTTGCAATACTTAGAGCCAA
TCAAATTACTCACGTACGCCTTTATGACGCTGACAGTCACATGCTGAAAG
CCCTTTCAAAGAGTGGAATTGAGGTAATTGTTGGTGTACTGAATGAGGAA
GTCTTGGGTATTGGAGAATCTGCATCAGCTGCAGCAGCCTGGATTAATAA
AAATGTTGCTGCGTACATGCCTACAACTAATATTACAGCCATTGCGGTTG
GCAGTCAGGTTCTTACCTCAATCCCTAATGCTGCCTCAGTTTTGGTGTCG
GCCATGAATAACCTTCATAAAGCTCTAGTTGCTTCAGATCTAAATTTCCA
AGTCAAAATTTCAACTCCACACTCCATGGATATAATCCCAAGGCCATTCC
CCCCTTCACCGCTACATTTAATCTGCATGGAACTCTACATTTAT
back to top