FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920782_ssr172 microsatellite FC920782_ssr172:172..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12110 contig Ccv1_Contig12110:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SALA4 (Peptide methionine sulfoxide reductase msrA OS=Salmonella agona (strain SL483) GN=msrA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDP
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_METMA (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina mazei GN=msrA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  433 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPT 687
            P  G + A F AGCFWG+E AF+++ GV  T VGYS G+   P+YE VC+  T H E VRV +DP+  S+ TLLD+FW  HDP T
Sbjct:   47 PGEGLEKATFAAGCFWGIEEAFRQIKGVVATAVGYSGGHFKRPTYEQVCTLDTGHAEAVRVIFDPEIVSYKTLLDVFWKIHDPTT 131          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_VIBVU (Peptide methionine sulfoxide reductase msrA OS=Vibrio vulnificus GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            GQQ   FG GCFWG E  F ++ GV  T VGYS G+  NP+Y++VCSG T H EVVRV +DP+    + LL+ FW RHDP
Sbjct:   41 GQQEILFGMGCFWGAERLFWQLDGVVSTSVGYSGGFTLNPTYQEVCSGQTGHTEVVRVIFDPQVLPLEQLLEKFWERHDP 120          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SHISS (Peptide methionine sulfoxide reductase msrA OS=Shigella sonnei (strain Ss046) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SHIFL (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri GN=msrA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SHIF8 (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri serotype 5b (strain 8401) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SHIBS (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 4 (strain Sb227) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T ++       ++    G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLHAVNGHSMTNE--PDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SHIB3 (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SERP5 (Peptide methionine sulfoxide reductase msrA OS=Serratia proteamaculans (strain 568) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 52/109 (47.71%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  367 RPSPDPASTEN----SAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T N     ++ Q PD      G + A F  GCFWGVE  F +  GV  T  GYS GY  NP+Y +VCSG T H EVVRV +DPK  S+  LL +FW  HDP
Sbjct:   20 RTTPMPVATLNVVTDHSMTQVPD------GLEVAIFAMGCFWGVERLFWQQQGVYSTAAGYSGGYTPNPTYREVCSGQTGHTEVVRVVFDPKIISYKQLLQVFWENHDP 122          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ESCF3 (Peptide methionine sulfoxide reductase msrA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_SALA45.146e-2146.67Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METMA6.721e-2152.94Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_VIBVU8.778e-2155.00Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_SHISS8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIFL8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIF88.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIBS8.778e-2143.81Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIB38.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SERP58.778e-2147.71Peptide methionine sulfoxide reductase msrA OS=Ser... [more]
MSRA_ESCF38.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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