FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920782_ssr172 microsatellite FC920782_ssr172:172..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12110 contig Ccv1_Contig12110:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ENT38 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sp. (strain 638) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:  367 RPSPDPAST----ENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T     N ++   PD      G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLHAVNNHSMTNVPD------GMEIALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVTRYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSM (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSE (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SE11) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLU (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLI (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12) GN=msrA PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLC (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL5 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOHS (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O9:H4 (strain HS) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECODH (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / DH10B) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
[Close]
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOBW (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / BW2952) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_ENT388.778e-2144.04Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_ECOSM8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOSE8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLU8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLI8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLC8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOL58.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOHS8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECODH8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOBW8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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