FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO8A (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O8 (strain IAI1) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO81 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O81 (strain ED1a) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO7I (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO55 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain 55989 / EAEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SACD2 (Peptide methionine sulfoxide reductase msrA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 49/101 (48.51%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  382 PASTENSAIAQGPDDDVPAPGQ-QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            P  T       G     P P   Q   FG GCFWG E  F ++PGV  T VGYS G+  NP+YE+VCSG+T HNEVV V Y+P + SF  LL +FW  H+P
Sbjct:   26 PIETAAEHFVSGMPLAPPYPSNMQQCVFGLGCFWGAERKFWQLPGVYVTAVGYSAGFTPNPTYEEVCSGSTGHNEVVLVVYNPSQVSFKKLLAVFWESHNP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCM (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain M66-2) GN=msrA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 45/83 (54.22%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  433 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            P  GQQ    G GCFWG E  F ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL  FW RHDP
Sbjct:   38 PQSGQQQILIGMGCFWGAERLFWQLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDP 120          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCH (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae GN=msrA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 45/83 (54.22%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  433 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            P  GQQ    G GCFWG E  F ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL  FW RHDP
Sbjct:   38 PQSGQQQILIGMGCFWGAERLFWQLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDP 120          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_VIBC3 (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=msrA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 45/83 (54.22%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  433 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            P  GQQ    G GCFWG E  F ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL  FW RHDP
Sbjct:   38 PQSGQQQILIGMGCFWGAERLFWQLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDP 120          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_ECO8A8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO818.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO7I8.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO558.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO458.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO248.778e-2146.67Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SACD21.497e-2048.51Peptide methionine sulfoxide reductase msrA OS=Sac... [more]
MSRA_VIBCM1.956e-2054.22Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBCH1.956e-2054.22Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBC31.956e-2054.22Peptide methionine sulfoxide reductase msrA OS=Vib... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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