FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920782_ssr172 microsatellite FC920782_ssr172:172..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12110 contig Ccv1_Contig12110:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_OCHAN (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 49/105 (46.67%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R  P P S  +   ++   +  P  G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  S D LL +FW  HDP
Sbjct:   23 RAQPIPTSATHFVNSRPLKEPWPE-GYKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_CORK4 (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  358 FGFRPSPDPASTENSAIAQGPDDDV---PAP--------------GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            FG RP+P        A+  G D+ +   PAP              GQ+    G GCFWG E  F ++ GV  T VGY+ GY  NP+Y +VC+G T H E VRV YDP+E SF+ L+  F+  HDP
Sbjct:    5 FGTRPTPTSIVNREDALP-GRDEPILPHPAPHTVLGTPIDGPWKDGQRSVVVGLGCFWGAEKLFWQIDGVESTAVGYAGGYTPNPTYREVCTGRTGHAETVRVIYDPQEVSFEDLIRTFFEAHDP 128          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERE8 (Peptide methionine sulfoxide reductase msrA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 49/105 (46.67%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T +  +  G        G + A F  GCFWGVE  F + PGV  T  GYS GY  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   19 RLTPMPVATLH--VVNGHSMTHVPEGMEVAIFAMGCFWGVERLFWQQPGVYSTAAGYSGGYTPNPTYHEVCSGRTAHAEVVRVVFDPAIISYKQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G Q A FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL +FW  HDP
Sbjct:   64 GTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDP 143          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_AZOVD (Peptide methionine sulfoxide reductase msrA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G + A FG GCFWG E  F + PGV  T VGY+ G   NP+YE+VCSG T H EVV V +DP+E  + TLL +FW  HDP
Sbjct:   48 GMRQALFGLGCFWGAERRFWQQPGVWTTAVGYAGGLTPNPTYEEVCSGLTGHTEVVLVVFDPQETDYRTLLKVFWEIHDP 127          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 49/102 (48.04%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  379 DPASTENSAIAQGPDDDVPAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            +P    N     G     P P G + A FG GCFWGVE  F +VPGV  T  GY+ G   NP+YE+VC+G T H EVV V YDP   S+  LL +FW  HDP
Sbjct:   23 EPLPVGNIHAVNGHPLKPPFPAGLETAVFGMGCFWGVERKFWQVPGVYSTAAGYAGGPTPNPTYEEVCTGRTGHAEVVLVVYDPATVSYAELLKVFWENHDP 124          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL6 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6 GN=msrA PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T   Y+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAVYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO5E (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++ GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO57 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 GN=msrA PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++ GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ECO27 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++ GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDP 121          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_OCHAN5.690e-2046.67Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_CORK45.690e-2041.60Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_YERE87.431e-2046.67Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_HUMAN7.431e-2053.75Peptide methionine sulfoxide reductase OS=Homo sap... [more]
MSRA_AZOVD7.431e-2055.00Peptide methionine sulfoxide reductase msrA OS=Azo... [more]
MSRA_RHOCS9.705e-2048.04Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_ECOL69.705e-2045.71Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO5E9.705e-2045.71Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO579.705e-2045.71Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO279.705e-2045.71Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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