FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920782_ssr172 microsatellite FC920782_ssr172:172..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12110 contig Ccv1_Contig12110:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPG (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPE (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPB (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPA (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERP3 (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_PECCP (Peptide methionine sulfoxide reductase msrA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFWGVE  F + PG+  T  GY  GY  NP+Y +VCSG T+H E VRV +DP   S+D LL +FW  HDP
Sbjct:   46 AIFAMGCFWGVERLFWQQPGIYSTAAGYIGGYTPNPTYREVCSGQTDHAEAVRVVFDPAVISYDQLLQLFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_METCA (Peptide methionine sulfoxide reductase msrA OS=Methylococcus capsulatus GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A FG GCFWG E  F  +PGV  T VGY+ G   NP+Y++VC+G T H EVV V Y+P +  FD LL +FW  HDP
Sbjct:   44 GTARAFFGMGCFWGAERRFWTLPGVYSTAVGYAGGSTPNPTYDEVCTGRTGHAEVVLVVYEPDKVGFDALLQVFWTSHDP 123          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_PSESM (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. tomato GN=msrA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  448 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            +FA FG GCFWG E    +  GV  T  GY+ G+  NP+YE+VCSG T H EVV V Y+P++ S+D+LL +FW  H+P
Sbjct:   50 EFAIFGLGCFWGAERRLWQQEGVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPEKISYDSLLKVFWEAHNP 127          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_PHOPR (Peptide methionine sulfoxide reductase msrA OS=Photobacterium profundum GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  463 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G GCFWG E  F  +PG+  T VGYS G+  NP+YE+VCSG T H+EVVR+ YDP   S + +L +FW  H+P
Sbjct:   49 GMGCFWGAERLFWNLPGIYSTAVGYSGGFTPNPTYEEVCSGKTGHSEVVRIIYDPLIISLEQILTLFWESHNP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G + A FG GCFWG E  F +  GV  T VGY+ G   NP+Y++VC+G T HNEVV V +DPK  S++ LL +FW  H+P
Sbjct:   46 GLETAMFGLGCFWGAERKFWQCEGVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNP 125          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_YERPG4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPE4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPB4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPA4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERP34.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_PECCP4.817e-1953.95Peptide methionine sulfoxide reductase msrA OS=Pec... [more]
MSRA_METCA4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_PSESM6.291e-1951.28Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PHOPR8.216e-1953.42Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_CYAP88.216e-1951.25Peptide methionine sulfoxide reductase msrA OS=Cya... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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