FC920785

Overview
NameFC920785
Unique NameFC920785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:51..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.326e-35
Identity = 75/142 (52.82%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  277 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFT 699
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FLFT
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFT 175          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.359e-34
Identity = 78/152 (51.32%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  259 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTSNN 708
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFT  N
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKN 222          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 58/122 (47.54%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  349 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTSNN 708
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT  N
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKN 150          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 58/122 (47.54%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  349 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTSNN 708
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT  N
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKN 150          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  358 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTSNN 708
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFT  N
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKN 152          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  349 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTSNN 708
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FT  N
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKN 153          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  358 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTSNN 708
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT  N
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKN 153          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  334 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFT 699
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFT 149          
BLAST of FC920785 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 42/74 (56.76%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  493 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTSNNGS 714
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFT   GS
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTIKGGS 58          
The following BLAST results are available for this feature:
BLAST of FC920785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE2.326e-3552.82Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR3.359e-3451.32Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB1.671e-2547.54Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN1.671e-2547.54Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP8.293e-2547.93Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA57.265e-2145.08Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY32.761e-2043.70Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE78.033e-2041.94Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU2.503e-1356.76Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32013A06EF RVDevelop1 Citrus clementina cDNA clone C32013A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920785 ID=FC920785; Name=FC920785; organism=Citrus clementina; type=EST; length=725bp
TTCTTAGAAGATAAAGGGATCCTAGCAAGTAACCCACAAGTGGTAGGGAG
CAAGATGGCAGCCTCGTTACAAGCCGCAGCTACACTGATGCAACCCACCA
AGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCA
CAGAGCGTTTCGAAGGCTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTC
TTGCTCTTTGAATAATGACTTGAAGGATTTGGCTCAGAAATGTGTTGATG
CTACCAAGATCGCTGGCTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCG
GGAGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTATGATGAAATCCA
GAGCAAGACATACATGGAAGTGAAGGGAACCGGAACTGCTAACCAGTGCC
CAACCATTGATGGCGGAGTTGACTCTTTTGCCTTCAAACCTGGCAAATAC
CAGGCTAAGAAGTTCTGCCTAGAACCAACTTCCTTCACTGTCAAGGCTGA
GGGTGTCAACAAGAATGCCCCACCAGATTTCCAGAACACCAAGCTCATGA
CCCGCCTTACCTACACCCTTGACGAGATTGAGGGACCTTTTGAAGTGTCC
CCCGATGGCACCATTAAGTTTGTGGAGAAGGATGGAATTGACTATGCTGC
TGTGACAGTTCAGCTGGCTGGAGGCGAGCGTGTGCCCTTCCTTTTCACAT
CAAACAATGGTAGCATCAGGCAAAC
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