FC920786 | Citrus Genome Database

Overview


Name	FC920786
Unique Name	FC920786
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	446

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig13179	contig	Ccv1_Contig13179:268..714.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.255e-48
Identity = 85/124 (68.55%), Postives = 93/124 (75.00%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYT 374
            AEFIA            IG+K+QT P      CGGVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL  A+ YMVAQCLGAICG G VKAF  + Y R GGGAN +ADGY+
Sbjct:   40 AEFIATLLFLYVTVATVIGHKNQTGP------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYS 157

HSP 2 Score: 46.2098 bits (108), Expect = 1.255e-48
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 2

Query:  377 GTGLGAEIIGTFVLVYTVFSATD 445
            GT LGAEIIGTFVLVYTVFSATD
Sbjct:  159 GTALGAEIIGTFVLVYTVFSATD 181

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 9.435e-46
Identity = 81/124 (65.32%), Postives = 89/124 (71.77%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYT 374
            AEFIA            IGYK Q+    + DQCGGVG LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL L RKVS+I A++Y+VAQCLG I G G VK   K  YN  GGGAN +A GY+
Sbjct:   42 AEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYS 161

HSP 2 Score: 46.2098 bits (108), Expect = 9.435e-46
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 2

Query:  377 GTGLGAEIIGTFVLVYTVFSATD 445
            GT LGAEIIGTFVLVYTVFSATD
Sbjct:  163 GTALGAEIIGTFVLVYTVFSATD 185

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.883e-43
Identity = 78/125 (62.40%), Postives = 84/125 (67.20%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  AL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GYT+
Sbjct:   56 AEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTK 174

HSP 2 Score: 48.9062 bits (115), Expect = 1.883e-43
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.883e-43
Identity = 78/125 (62.40%), Postives = 84/125 (67.20%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  AL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GYT+
Sbjct:   56 AEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTK 174

HSP 2 Score: 48.9062 bits (115), Expect = 1.883e-43
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.453e-43
Identity = 77/125 (61.60%), Postives = 85/125 (68.00%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ YM+ QCLGAICG G VK FQ + Y   GGGAN +A GYT+
Sbjct:   57 AEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTK 175

HSP 2 Score: 48.9062 bits (115), Expect = 2.453e-43
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG+GLGAEIIGTFVLVYTVFSATD
Sbjct:  175 KGSGLGAEIIGTFVLVYTVFSATD 198

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.197e-43
Identity = 77/125 (61.60%), Postives = 84/125 (67.20%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ Y+V QCLGAICG G VK FQ   Y   GGGAN +A GYT+
Sbjct:   56 AEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTK 174

HSP 2 Score: 48.9062 bits (115), Expect = 3.197e-43
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.166e-43
Identity = 78/125 (62.40%), Postives = 84/125 (67.20%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  AL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GYT+
Sbjct:   57 AEFIATFLFLYVTVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTK 175

HSP 2 Score: 48.521 bits (114), Expect = 4.166e-43
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG+GLGAEI+GTFVLVYTVFSATD
Sbjct:  175 KGSGLGAEIVGTFVLVYTVFSATD 198

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.430e-43
Identity = 77/125 (61.60%), Postives = 85/125 (68.00%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ Y+V QCLGAICG G VK FQ + Y   GGGAN +A GYT+
Sbjct:   56 AEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTK 174

HSP 2 Score: 48.9062 bits (115), Expect = 5.430e-43
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG+GLGAEIIGTFVLVYTVFSATD
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATD 197

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.662e-42
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 3

Query:   87 NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  AL Y++ QCLGA+CG G VK FQ+  Y   GGGAN +A GYT+
Sbjct:   81 STSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTK 177

HSP 2 Score: 47.3654 bits (111), Expect = 7.662e-42
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEI+GTF+LVYTVFSATD
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATD 200

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.983e-42
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 3

Query:   87 NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ Y++ QCLGAICG G VK FQ+  Y   GGGAN +A GYT+
Sbjct:   84 STSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTK 180

HSP 2 Score: 47.3654 bits (111), Expect = 9.983e-42
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 2

Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEI+GTF+LVYTVFSATD
Sbjct:  180 KGDGLGAEIVGTFILVYTVFSATD 203

The following BLAST results are available for this feature:

BLAST of FC920786 vs. ExPASy Swiss-Prot

BLAST of FC920786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60


Match Name	E-value	Identity	Description
PIP28_ARATH	1.255e-48	68.55	Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ...	[more]
PIP26_ORYSJ	9.435e-46	65.32	Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j...	[more]
PIP11_VICFA	1.883e-43	62.40	Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1	[more]
PIP11_ARATH	1.883e-43	62.40	Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1...	[more]
PIP14_ARATH	2.453e-43	61.60	Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ...	[more]
PIP12_ARATH	3.197e-43	61.60	Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2...	[more]
PIP15_ARATH	4.166e-43	62.40	Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ...	[more]
PIP13_ARATH	5.430e-43	61.60	Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3...	[more]
PIP12_MAIZE	7.662e-42	69.07	Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1	[more]
PIP13_MAIZE	9.983e-42	69.07	Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32013A07EF RVDevelop1 Citrus clementina cDNA clone C32013A07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920786 ID=FC920786; Name=FC920786; organism=Citrus clementina; type=EST; length=446bp
TTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACT
GTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGTG
TGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCT
TCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCCG
GCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCTAGC
TCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGT
TTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGCC
AATGAGCTAGCTGATGGATACACAAGGGCACCGGACTGGGTGCTGAGATC
ATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATC