FC920786 | Citrus Genome Database

Overview


Name	FC920786
Unique Name	FC920786
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	446

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig13179	contig	Ccv1_Contig13179:268..714.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 1.446e-13
Identity = 42/122 (34.43%), Postives = 58/122 (47.54%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            AEF+A            +G+K     N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S+  AL+Y++AQC+GAI     +     S       G N+LADG
Sbjct:   16 AEFLATTLFVFISIGSALGFKYPVGNNQTAVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGN-SLGRNDLADG 132

HSP 2 Score: 30.8018 bits (68), Expect = 1.446e-13
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            ++ G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 1.878e-13
Identity = 42/122 (34.43%), Postives = 58/122 (47.54%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            AEF+A            +G+K     N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S+  AL+Y++AQC+GAI     +     S       G N+LADG
Sbjct:   16 AEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGN-SLGRNDLADG 132

HSP 2 Score: 30.8018 bits (68), Expect = 1.878e-13
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            ++ G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 62.003 bits (149), Expect = 1.976e-12
Identity = 39/122 (31.97%), Postives = 59/122 (48.36%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            AEF+A            +G+    + N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++ A++Y++AQC+GAI     +     S  +    G N+LA G
Sbjct:   16 AEFLAMTLFVFISIGSALGFNYPLERNQTLVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHG 132

HSP 2 Score: 30.8018 bits (68), Expect = 1.976e-12
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            ++ G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 2.566e-12
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 3

Query:  123 IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            ++ AFG  I  L      ISG H+NPAVT GL L  ++S++ A++Y++AQC+GAI     +     S  +    G NELA G
Sbjct:   54 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPG 134

HSP 2 Score: 30.8018 bits (68), Expect = 2.566e-12
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            ++ G GLG EIIGT  LV  V + TD
Sbjct:  135 VNSGQGLGIEIIGTLQLVLCVLATTD 160

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 61.2326 bits (147), Expect = 3.332e-12
Identity = 39/122 (31.97%), Postives = 58/122 (47.54%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            AEF+A            +G+    + N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++ A++Y++AQC+GAI     +     S       G N+LA G
Sbjct:   16 AEFLAMTLFVFISIGSALGFNYPLERNQTLVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARG 132

HSP 2 Score: 30.8018 bits (68), Expect = 3.332e-12
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            ++ G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 59.6918 bits (143), Expect = 9.473e-12
Identity = 41/123 (33.33%), Postives = 59/123 (47.97%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            AEF+A            +G+      N  T   G V   + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++ A++Y++AQC+GAI     +     S  +    G N LA G
Sbjct:   16 AEFLAMILFIFISIGSALGFHYPIKSNQTT---GAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SLGLNALAPG 134

HSP 2 Score: 30.8018 bits (68), Expect = 9.473e-12
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            ++ G GLG EIIGT  LV  V + TD
Sbjct:  135 VNSGQGLGIEIIGTLQLVLCVLATTD 160

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.233e-11
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGC 296
            AEFI+            I +   TD    T    G+    +A AFG  +F+ V   A ISGGH+NPAVTFG+ LG  ++L+  +LY +AQ LG++  C
Sbjct:   26 AEFISTLIFVFAGSGSGIAFNKITDNGATTPS--GLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAAC 119

HSP 2 Score: 21.9422 bits (45), Expect = 1.233e-11
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  395 EIIGTFVLVYTVFS 436
            EI+ TF LVYTV++
Sbjct:  149 EIVMTFGLVYTVYA 162

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 1.234e-11
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGY-KSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            AEFI+            I Y K  +D  L+T      G++ IA   G  +F+ V   A ISGGH+NPAVTFGL +G ++++I  + Y +AQ LG+   C  +K
Sbjct:   23 AEFISTLLFVFAGVGSAIAYAKLTSDAALDTP-----GLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK 120

HSP 2 Score: 24.2534 bits (51), Expect = 1.234e-11
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  383 GLGAEIIGTFVLVYTVFS 436
            G+  EII TF LVYTV++
Sbjct:  142 GVVMEIIITFALVYTVYA 159

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 1.596e-11
Identity = 41/123 (33.33%), Postives = 59/123 (47.97%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            AEF+A            +G+      N  T   G V   + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++ A++Y++AQC+GAI     +     S  +    G N LA G
Sbjct:   16 AEFLAMILFIFISIGSALGFHYPIKSNQTT---GAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDN-SLGLNALAPG 134

HSP 2 Score: 30.8018 bits (68), Expect = 1.596e-11
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            ++ G GLG EIIGT  LV  V + TD
Sbjct:  135 VNSGQGLGIEIIGTLQLVLCVLATTD 160

[Close]

BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 3

Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL+ AL+Y VAQ LG++  C  +K
Sbjct:   25 AEFISTLIFVFAGSGSGMAFSKLTDGGAATP----AGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLK 122

The following BLAST results are available for this feature:

BLAST of FC920786 vs. ExPASy Swiss-Prot

BLAST of FC920786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60


Match Name	E-value	Identity	Description
AQP1_HUMAN	1.446e-13	34.43	Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3	[more]
AQP1_PONAB	1.878e-13	34.43	Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3	[more]
AQP1_MOUSE	1.976e-12	31.97	Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3	[more]
AQP1_CANFA	2.566e-12	40.24	Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3	[more]
AQP1_RAT	3.332e-12	31.97	Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4	[more]
AQP1_BOVIN	9.473e-12	33.33	Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3	[more]
TIP12_ARATH	1.233e-11	38.78	Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2...	[more]
TIP21_ARATH	1.234e-11	37.86	Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1...	[more]
AQP1_SHEEP	1.596e-11	33.33	Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3	[more]
TIP12_MAIZE	1.784e-11	37.25	Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C32013A07EF RVDevelop1 Citrus clementina cDNA clone C32013A07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920786 ID=FC920786; Name=FC920786; organism=Citrus clementina; type=EST; length=446bp
TTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACT
GTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGTG
TGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCT
TCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCCG
GCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCTAGC
TCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGT
TTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGCC
AATGAGCTAGCTGATGGATACACAAGGGCACCGGACTGGGTGCTGAGATC
ATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATC