FC920791

Overview
NameFC920791
Unique NameFC920791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14197 contig Ccv1_Contig14197:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920791 vs. ExPASy Swiss-Prot
Match: XYLS_ECOLI (Alpha-xylosidase OS=Escherichia coli (strain K12) GN=yicI PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 53/205 (25.85%), Postives = 90/205 (43.90%), Query Frame = 3
Query:   27 HSIYGFSQSIATHKALLGLEGKRPFIL-SRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVF 638
            H+ Y +  +      L    G+   +L +RS  VG+  +  HW GD    +E +  S+   L+ G+ G      DI GF       +  RW   G     SR H +        Y  ES  +  R    ++ +++P+LY     A+  G P+ R +   FP+   C  +  Q++LG ++MV+PV  +    V+   P G W +++
Sbjct:  437 HNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDES-CDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEA-GDVQFYLPEGRWTHLW 639          
BLAST of FC920791 vs. ExPASy Swiss-Prot
Match: K1161_MOUSE (Uncharacterized family 31 glucosidase KIAA1161 OS=Mus musculus GN=Kiaa1161 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 54/174 (31.03%), Postives = 78/174 (44.83%), Query Frame = 3
Query:  183 LKYSISTMLNFGIFGVPMVGSDICGFY------------PAPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYN----VFDMTQAI 656
            L+  I  +L   + G P +  D+ G              P P  EL  RW+EV AF P     A  +S     Y  E VA + + A      + P L  L  E   +G PI RPL++  P     + + +QFL+G +L+V+PVLE GK +     P G W +    +FD T  +
Sbjct:  530 LRSLIPAVLTVSMLGYPFILPDMIGGNAVPERTAGRQDGPGPERELYVRWLEVAAFMP-----AMQFSIPPWQYDAEVVAIAHKFAALRASLVAPLLLELAGEITDTGDPIVRPLWWIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPAGKWRSYKGELFDKTPVL 698          
BLAST of FC920791 vs. ExPASy Swiss-Prot
Match: K1161_HUMAN (Uncharacterized family 31 glucosidase KIAA1161 OS=Homo sapiens GN=KIAA1161 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 53/171 (30.99%), Postives = 77/171 (45.03%), Query Frame = 3
Query:  183 LKYSISTMLNFGIFGVPMVGSDICGFYPAPTE---------ELCNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYN----VFDMTQAI 656
            L+  I  +L   + G P +  D+ G    P           EL  RW+EV AF P     A  +S     Y  E VA + + A      + P L  L  E   +G PI RPL++  P     + + +QFL+G +L+V+PVLE GK +     P G W +    +FD T  +
Sbjct:  531 LRSLIPAVLTVSMLGYPFILPDMVGGNAVPQRTAGGDVPERELYIRWLEVAAFMP-----AMQFSIPPWRYDAEVVAIAQKFAALRASLVAPLLLELAGEVTDTGDPIVRPLWWIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPAGKWRSYKGELFDKTPVL 696          
BLAST of FC920791 vs. ExPASy Swiss-Prot
Match: YIHQ_ECOLI (Alpha-glucosidase yihQ OS=Escherichia coli (strain K12) GN=yihQ PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = 3
Query:  111 RSTFVGSGHYAAH-WTGDNKGTW---EDLKYSISTMLNFGIFGVPMVGSDICG----FYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRY---KLLPFLYTLNYEAHLSGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSKDGKFVTLDAPL 698
            R+   GS  Y+   W GD    W   + L   +   L+  + G  +  SDI G    F    ++EL  RW +  AF P  R H    +   + +Q++  AE+  +   M      L P+L         SG P+ RPLF  + +    Y +  Q+LLG  ++V+PV E+G+S      P  +W + +       +  G  VT++AP+
Sbjct:  455 RAGSTGSQKYSTMMWAGDQNVDWSLDDGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEG--NRPGDNWQFDGDAETIAHFARMTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHTYTLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAW----TGEAFRGGEVTVNAPI 655          
The following BLAST results are available for this feature:
BLAST of FC920791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XYLS_ECOLI1.801e-1425.85Alpha-xylosidase OS=Escherichia coli (strain K12) ... [more]
K1161_MOUSE1.686e-1231.03Uncharacterized family 31 glucosidase KIAA1161 OS=... [more]
K1161_HUMAN3.756e-1230.99Uncharacterized family 31 glucosidase KIAA1161 OS=... [more]
YIHQ_ECOLI9.252e-1127.54Alpha-glucosidase yihQ OS=Escherichia coli (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32013A12EF RVDevelop1 Citrus clementina cDNA clone C32013A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920791 ID=FC920791; Name=FC920791; organism=Citrus clementina; type=EST; length=740bp
ACAATGGTGTTCTCGAATATGATGGTCACAGTATTTATGGATTCTCTCAA
TCCATTGCAACTCACAAGGCTCTCCTAGGGCTTGAAGGCAAGAGGCCATT
CATATTATCACGCTCTACTTTTGTTGGTTCTGGTCATTATGCTGCACACT
GGACGGGTGATAATAAGGGAACATGGGAAGATCTAAAGTATTCTATTTCA
ACCATGCTGAACTTCGGCATATTTGGGGTTCCAATGGTTGGTTCCGATAT
ATGTGGGTTCTATCCTGCCCCAACAGAAGAGCTTTGTAACCGATGGATAG
AAGTAGGTGCATTCTATCCGTTCTCAAGGGATCATGCAAACTACTACTCC
CCAAGACAGGAGCTTTATCAGTGGGAGTCAGTAGCAGAGTCCGCCCGAAA
TGCTCTGGGTATGAGGTATAAACTACTTCCTTTCCTGTACACGTTGAACT
ATGAAGCCCATTTAAGTGGAGCTCCAATAGCCAGGCCACTTTTCTTCTCA
TTCCCAAATTATGTCGAGTGTTACAATGTGAGCACCCAGTTCTTGCTGGG
GAGCAGCCTGATGGTTTCTCCAGTGCTTGAGCAGGGGAAGTCACAGGTTA
AAGCACTCTTTCCTCCAGGTAGTTGGTACAATGTGTTTGATATGACACAA
GCCATTTCATCGAAAGATGGGAAATTTGTTACGCTTGATGCACCTTTACA
TGTGGNTAACGTGCACTTGCACAGAATACATCCTTCCATG
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