FC920794

Overview
NameFC920794
Unique NameFC920794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14244 contig Ccv1_Contig14244:28..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 72/190 (37.89%), Postives = 104/190 (54.74%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQ--GLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKV 621
            +V  K   LK +  G P ++D  +K   +       +  +L++ L+LS DPYMR      ++        G  + G  VA+VV+S +P +  G LV   +GW  +S+    Q   L       +PLS   G +GMPG+TA+ G  EIC  K G+ + V+AA+GAVG +VGQ AK+ GC VVG+AGS EKV
Sbjct:    1 MVRAKNWTLKKHFHGHPTDSDFELKTVELP---PLNNGEVLLEALFLSVDPYMRLGSKRLKE--------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKV 179          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 71/190 (37.37%), Postives = 104/190 (54.74%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKV 621
            +V  K   LK +  G+P  ++  +K   +   ++ G   +L++ L+L+ DPYMR                G  + G  VA+V++S +  F  G +V    GW  +S+   KN + L       +PLS   G +GMPG+TA+ G  +IC  K GE + V+AA+GAVG +VGQ AKL GC VVG+AGS EKV
Sbjct:    1 MVRAKSWTLKKHFVGYPTPSNFELKTVELP-PLKNGE--VLLEALFLTVDPYMRIAAR--------KLKEGDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV 179          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 65/181 (35.91%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  100 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSREK 618
            G P   +  V+  ++   V EG   + V+ LYLS DPYMR RM  N+D      TP      ++G GV  + +S H  F KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS A+GA G L GQ  +L+GC  VVG  G+ EK
Sbjct:   16 GHPVAENFRVEEVNLPDCVNEGQ--VQVRTLYLSVDPYMRCRM--NEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEK 192          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 61/179 (34.08%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  100 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSREK 618
            G P   +  V+  S+   + EG   + V+ LYLS DPYMR +M+ +   D+ + +      +G G+  V +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E    +    + + VS A+GA G L GQ   L+GC  VVG  G++EK
Sbjct:   16 GNPVAENFRVEEFSLPDALNEGQ--VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEK 192          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 61/179 (34.08%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  100 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKG--EYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSREK 618
            G P   +  V+  S+   + EG   + V+ LYLS DPYMR +M+     D+ + +      +G G+  + +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS A+GA G L GQ   L+GC  VVG  G+ EK
Sbjct:   16 GNPVAENFRVEEVSLPDTINEGQ--VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEK 192          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 59/167 (35.33%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  154 VEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSREKVWLI 630
            + EG   + V+ LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS A+GA G + GQ   L+GC  VVG  G+ EK  L+
Sbjct:   34 INEGQ--VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLL 196          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 58/167 (34.73%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  154 VEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSREKVWLI 630
            + EG   + V+ LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS A+GA G + GQ    +GC  VVG  G+ EK  L+
Sbjct:   34 INEGQ--VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILL 196          
The following BLAST results are available for this feature:
BLAST of FC920794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_RABIT1.519e-2537.89Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_PIG3.743e-2437.37Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR2_BOVIN1.289e-1635.91Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_MOUSE4.899e-1634.08Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
PTGR2_RAT8.357e-1634.08Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_PONAB1.862e-1535.33Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN5.417e-1534.73Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]

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Properties
Property NameValue
Genbank descriptionC32013B04EF RVDevelop1 Citrus clementina cDNA clone C32013B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920794 ID=FC920794; Name=FC920794; organism=Citrus clementina; type=EST; length=686bp
GTCAGAAACAGAGTGAAACAAGGAAGAAACAGAGCAACAATGGCGGCTAA
CAGCGAAGTGGTGAGCAACAAGCAGGTGATATTAAAGAACTACGTAGAAG
GGTTTCCCAAAGAGACAGACATGTTGGTAAAAGCAAGTTCAATTTCATTG
AAAGTAGAGGAAGGCTCAAATGCAATTCTTGTCAAGAATCTTTACTTGTC
TTGCGATCCTTACATGAGAGCTCGCATGTCCTTTAATCAAGATCCTGATT
TCTCTTCTTTCACTCCTGGCTCTCCCATAGAAGGATTTGGAGTGGCTAAG
GTGGTGGATTCAGGACACCCAGAATTCAAGAAAGGAGATTTAGTCTGGGG
AACAACTGGGTGGGAAGAGTATAGTCTCATAAAAAATCCTCAGGGCCTCT
TTAAAATTCATCACACTGATGTTCCCCTTTCTTATTATACTGGAATTCTT
GGTATGCCTGGGATGACAGCTTGGGCTGGTTTTTATGAAATTTGTGCTCC
AAAGAAAGGCGAATACATCTATGTTTCTGCAGCATCTGGTGCAGTTGGTC
AGCTTGTTGGGCAATTTGCAAAGTTGATGGGTTGCTATGTTGTTGGAAGT
GCTGGCAGTAGAGAAAAGGTGTGGTTAATTCCAATGCAGTCCCAATTGGT
AATTGCNATTCAAAATTTTGCAGTCCTTGGATGATC
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