FC920798

Overview
NameFC920798
Unique NameFC920798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.490e-50
Identity = 92/148 (62.16%), Postives = 123/148 (83.11%), Query Frame = 3
Query:  267 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKEDYS 710
            G  + + DY+FKVVLIGDS VGKS +L+RF R+EF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+G +SDL   RAVPT++A+  A+K   S
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 149          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.490e-50
Identity = 92/148 (62.16%), Postives = 123/148 (83.11%), Query Frame = 3
Query:  267 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKEDYS 710
            G  + + DY+FKVVLIGDS VGKS +L+RF R+EF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+G +SDL   RAVPT++A+  A+K   S
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 149          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.247e-50
Identity = 92/138 (66.67%), Postives = 118/138 (85.51%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            DY+FKVVLIGDS VGKS +L+RF ++EF+L+SK+TIGVEF TRTL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++RR +F+++ RWL+EL++H D NIV++L+G +SDL    AVPTED K  A++E
Sbjct:   11 DYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQE 148          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.245e-50
Identity = 95/148 (64.19%), Postives = 121/148 (81.76%), Query Frame = 3
Query:  258 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            GGY   ++  DY+FK+VLIGDS VGKS +L+RF ++EF+L+SK+TIGVEF T+TL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++RR +F++  RWL+ELR H D NIV++LIG +SDL    AVPTED K  A++E
Sbjct:    2 GGYRTDDE-YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERE 148          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.245e-50
Identity = 95/145 (65.52%), Postives = 119/145 (82.07%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKEDYS 710
            + + DY+FK+VLIGDS VGKS IL+RF R+EF L+SK+TIGVEF TRTL ++ K+VKAQIWDTAGQERYRA+TSAYYRGAVGA+L YDI++RQ+FD++ RWL ELR H D NIVIIL G +SDL+  RAV  +D + + +KE  S
Sbjct:    6 DHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLS 150          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 94/149 (63.09%), Postives = 124/149 (83.22%), Query Frame = 3
Query:  258 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKED 704
            GGY   +   DY+FK+VLIGDS VGKS +L+RF+R+EF+L+SK+TIGVEF TR++ +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA++VYDI+R  +F+++ RWL+ELR H D+NIVI+L+G ++DL   RAV TEDAK  A++E+
Sbjct:    3 GGYRAEDD-YDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAEREN 150          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.614e-49
Identity = 93/145 (64.14%), Postives = 121/145 (83.45%), Query Frame = 3
Query:  267 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            G  + +  Y+FK+VLIGDS VGKS IL+RF R+ FSLDSK+TIGVEF T++L ++ K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQSFD++ RWL ELR HAD +IVI+++G +SDL   RAV  ++ K +A+KE
Sbjct:    3 GRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKE 147          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.595e-49
Identity = 91/142 (64.08%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            + + DY+FKVVLIGDS VGKS +L+RF ++EFSL+SK+TIGVEF TR+L +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++R  +F+++  WL+ELR+H D NIV++L+G +SDL    AV TEDAK  A+KE
Sbjct:    7 DDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKE 148          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 92/146 (63.01%), Postives = 120/146 (82.19%), Query Frame = 3
Query:  273 PNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKEDYS 710
            P+   DY+FKVVLIGDS VGKS +L+RF R+EFSL+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +F+++ RWL+ELR HAD NIVI+L+G +SDL+  R V TE A+   ++E  S
Sbjct:    5 PDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLS 150          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.010e-49
Identity = 90/141 (63.83%), Postives = 118/141 (83.69%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKEDYS 710
            DY+FK VLIGDS VGKS +L RF R+EF+++SK+TIGVEF TR +V+ +K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDI+++ SFD++ RWL+ELR HAD NIVI+L+G ++DL   RAV TE+A+  A + + S
Sbjct:    8 DYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLS 148          
The following BLAST results are available for this feature:
BLAST of FC920798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_CANFA2.490e-5062.16Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN2.490e-5062.16Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAA1B_ARATH4.247e-5066.67Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11D_LOTJA7.245e-5064.19Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC7.245e-5065.52Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RB11B_TOBAC1.236e-4963.09Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ1.614e-4964.14Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAA1C_ARATH3.595e-4964.08Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE4.696e-4963.01Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
YPT3_SCHPO8.010e-4963.83GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC32013B08EF RVDevelop1 Citrus clementina cDNA clone C32013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920798 ID=FC920798; Name=FC920798; organism=Citrus clementina; type=EST; length=712bp
CTCGCCGGGGAGCTCACCCGAGACATACGCTCTAGCCAAGCCATCATCCT
TACAGACACCGCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAAC
TGGTGGAACCCACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTT
TCATCCCACCCAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGT
TGGTCGGTCTTGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGC
CAGCGGAGGAGGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCA
AAGTTGTTTTAATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCA
AGGTTTGCTCGAAGCGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGT
TGAGTTTCAAACTAGGACTTTAGTTATTCAACATAAGAGCGTCAAGGCAC
AGATCTGGGACACTGCTGGCCAAGAACGATACAGGGCTGTTACAAGTGCA
TATTACAGAGGTGCTGTTGGGGCAATGCTGGTTTACGACATTAGCAGACG
CCAGAGCTTTGATCACATACCCCGTTGGCTGGAAGAGTTGCGAAGCCATG
CTGACAAGAATATTGTTATCATTCTCATTGGCAAACAAAGTGACCTTGAG
GAGCAGCGGGCGGTTCCTACAGAAGATGCCAAAGAAATTGCTCAGAAGGA
GGACTATTCTTC
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