FC920798

Overview
NameFC920798
Unique NameFC920798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.330e-48
Identity = 90/138 (65.22%), Postives = 115/138 (83.33%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            DY+FKVVLIGDS VGKS +L+RF R+EFSL+SK+TIGVEF TR+L +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++R  +F+++ RWL+ELR H D NIV++L+G +SDL    AV T++ K  A++E
Sbjct:   12 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERE 149          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.973e-47
Identity = 87/142 (61.27%), Postives = 120/142 (84.51%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            + + DY+FK+VLIGDS VGKS +L+RF ++EF+L+SK+TIGVEF T++L I +K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++R  +++++ RWL+ELR H D NIV++LIG +SDL    AV T++AK +A++E
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAERE 148          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.740e-47
Identity = 90/142 (63.38%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            + + DY+FK+VLIGDS VGKS +L+RF R+EF+L+SK+TIGVEF T++L I  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++R  +F+   RWL+ELR H D NIV++LIG +SDL     V TED K  A+KE
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKE 148          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.740e-47
Identity = 87/142 (61.27%), Postives = 116/142 (81.69%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            +++ DY+FK+VLIGDS VGKS +L+RF ++EF+L+SK+TIGVEF T+T  ++ K VKAQIWDTAGQERYRA+TSAYYRGAVGA+L+YD++R  +F++  RWL ELR H D NIV++LIG + DL    AV TE+AK  A++E
Sbjct:    7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERE 148          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 88/137 (64.23%), Postives = 112/137 (81.75%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            D +FK+VLIGDS VGKS +L+RF ++EF++DSK+TIGVEF TRTL I  K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDIS+  S+++   WL ELR +AD N+ + LIG +SDL   RAVPTE++K  AQ+
Sbjct:   11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE 147          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 84/140 (60.00%), Postives = 118/140 (84.29%), Query Frame = 3
Query:  279 QKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            ++ DY++K+VLIGDS VGKS +L+RF R+EFSL++K+TIGVEF TRT+  + K++KAQ+WDTAGQERYRA+TSAYYRGAVGA+LVYDI+++ ++  + RW+ ELR +AD+NI I+L+G +SDL   R V T++AKE ++K
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEK 147          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 87/144 (60.42%), Postives = 119/144 (82.64%), Query Frame = 3
Query:  270 DPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            D   + +Y+FK+V+IGDSAVGKS +L+R+AR+EFS +SKATIGVEFQT+++ I+ K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDI+RR +F+ + RWL+EL+ H+D  +  +L+G + DLE  RAV  E+ K +A++E
Sbjct:    4 DDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEE 147          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 85/137 (62.04%), Postives = 112/137 (81.75%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            DY+FK+VLIGDS VGKS +L+RF   EF+++SK+TIGVEF TRT+ +++K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDIS+  S+++   WL ELR +AD N+ + LIG +SDL   RAVPT++AK  A +
Sbjct:   11 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAME 147          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 86/144 (59.72%), Postives = 117/144 (81.25%), Query Frame = 3
Query:  270 DPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKE 701
            D  +  +Y+FK+V+IGDSAVGKS +L R+AR+EF+ +SKATIGVEFQT++++I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDI+R  +F+++ RWL+EL +H+D  +  +LIG + DLE  RAV  E+ K +A+ E
Sbjct:    4 DDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESE 147          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.850e-43
Identity = 81/136 (59.56%), Postives = 112/136 (82.35%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQ 695
            ++VFKVVLIG+S VGK+ +L+RF R+EFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+G +SDL + R VPTE+A+  A+
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE 145          
The following BLAST results are available for this feature:
BLAST of FC920798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC2_ORYSJ2.330e-4865.22Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL1.973e-4761.27Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11E_LOTJA5.740e-4763.38Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH5.740e-4761.27Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT31_YEAST2.181e-4664.23GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11A_DICDI2.181e-4660.00Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
ARA1_ARATH2.181e-4660.42Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPT32_YEAST3.721e-4662.04GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
ARA4_ARATH1.083e-4559.72Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB25_RABIT3.850e-4359.56Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013B08EF RVDevelop1 Citrus clementina cDNA clone C32013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920798 ID=FC920798; Name=FC920798; organism=Citrus clementina; type=EST; length=712bp
CTCGCCGGGGAGCTCACCCGAGACATACGCTCTAGCCAAGCCATCATCCT
TACAGACACCGCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAAC
TGGTGGAACCCACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTT
TCATCCCACCCAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGT
TGGTCGGTCTTGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGC
CAGCGGAGGAGGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCA
AAGTTGTTTTAATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCA
AGGTTTGCTCGAAGCGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGT
TGAGTTTCAAACTAGGACTTTAGTTATTCAACATAAGAGCGTCAAGGCAC
AGATCTGGGACACTGCTGGCCAAGAACGATACAGGGCTGTTACAAGTGCA
TATTACAGAGGTGCTGTTGGGGCAATGCTGGTTTACGACATTAGCAGACG
CCAGAGCTTTGATCACATACCCCGTTGGCTGGAAGAGTTGCGAAGCCATG
CTGACAAGAATATTGTTATCATTCTCATTGGCAAACAAAGTGACCTTGAG
GAGCAGCGGGCGGTTCCTACAGAAGATGCCAAAGAAATTGCTCAGAAGGA
GGACTATTCTTC
back to top