FC920798

Overview
NameFC920798
Unique NameFC920798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.850e-43
Identity = 81/136 (59.56%), Postives = 112/136 (82.35%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQ 695
            ++VFKVVLIG+S VGK+ +L+RF R+EFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+G +SDL + R VPTE+A+  A+
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.850e-43
Identity = 80/136 (58.82%), Postives = 112/136 (82.35%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQ 695
            ++VFKVVLIG+S VGK+ +L+RF R+EFS DS+ TIGVEF TRT+++   ++KAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+G +SDL + R VPTE+A+  A+
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 81/140 (57.86%), Postives = 113/140 (80.71%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQ 695
            ++  ++VFKVVLIG+S VGK+ +L+RF R+EFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+G +SDL + R VPTE+A   A+
Sbjct:    6 DEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 80/144 (55.56%), Postives = 115/144 (79.86%), Query Frame = 3
Query:  279 QKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKEDYS 710
            ++ +Y+FK+V+IGDSAVGKS +L RF R+EF+  +KATIGV+F T+++ I +K++ AQ WDTAGQER+RAVTS YYRGAVGAM+VYDI+ + SF ++ RWL ELR  A+++I+I+++G +SDLE  R VPT++A+  A+    S
Sbjct:    5 EEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKIS 148          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.814e-39
Identity = 76/150 (50.67%), Postives = 108/150 (72.00%), Query Frame = 3
Query:  255 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKED 704
            G G GDP+++ D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K VK QIWDTAGQER+R +T +YYR A GA+L YDI++R SF  +P W+E++R +A  NIV +LIG +SDL E R V   +A+ +A+  D
Sbjct:    5 GPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD 154          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.186e-38
Identity = 75/151 (49.67%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  252 SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKED 704
            +G G GD ++  D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K VK QIWDTAGQER+R +T +YYR A GA+L YDIS+R +F  +P W+E++R +A  NIV +LIG +SDL + R VP  +A+ +A+  D
Sbjct:    2 AGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYD 152          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 75/151 (49.67%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  252 SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKED 704
            +G G GD ++  D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K VK QIWDTAGQER+R +T +YYR A GA+L YDIS+R +F  +P W+E++R +A  NIV +LIG +SDL + R VP  +A+ +A+  D
Sbjct:    2 AGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYD 152          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 68/137 (49.64%), Postives = 108/137 (78.83%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            DY+ K+V+IGDS VGKS +L+R+ ++EFS+   +TIGVEF T+TL I +K +K Q+WDTAGQE+Y ++T +YY+GA+GA++VY+I+ R SF+++ +WL++ R +A ++  I+L+G +SDL+E R V T + K+ A+K
Sbjct:    9 DYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEK 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIG ++DLE QR V  E+AK+ A++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIG ++DLE QR V  E+AK+ A++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 145          
The following BLAST results are available for this feature:
BLAST of FC920798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_HUMAN3.850e-4359.56Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_BOVIN3.850e-4358.82Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB25_MOUSE1.120e-4257.86Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RB11C_DICDI1.911e-4255.56Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB43_HUMAN9.814e-3950.67Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB43_RAT2.186e-3849.67Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE2.855e-3849.67Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RB11B_DICDI4.123e-3749.64Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB14_RAT2.046e-3652.21Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB2.046e-3652.21Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC32013B08EF RVDevelop1 Citrus clementina cDNA clone C32013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920798 ID=FC920798; Name=FC920798; organism=Citrus clementina; type=EST; length=712bp
CTCGCCGGGGAGCTCACCCGAGACATACGCTCTAGCCAAGCCATCATCCT
TACAGACACCGCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAAC
TGGTGGAACCCACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTT
TCATCCCACCCAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGT
TGGTCGGTCTTGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGC
CAGCGGAGGAGGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCA
AAGTTGTTTTAATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCA
AGGTTTGCTCGAAGCGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGT
TGAGTTTCAAACTAGGACTTTAGTTATTCAACATAAGAGCGTCAAGGCAC
AGATCTGGGACACTGCTGGCCAAGAACGATACAGGGCTGTTACAAGTGCA
TATTACAGAGGTGCTGTTGGGGCAATGCTGGTTTACGACATTAGCAGACG
CCAGAGCTTTGATCACATACCCCGTTGGCTGGAAGAGTTGCGAAGCCATG
CTGACAAGAATATTGTTATCATTCTCATTGGCAAACAAAGTGACCTTGAG
GAGCAGCGGGCGGTTCCTACAGAAGATGCCAAAGAAATTGCTCAGAAGGA
GGACTATTCTTC
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