FC920798

Overview
NameFC920798
Unique NameFC920798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIG ++DLE QR V  E+AK+ A++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIG ++DLE QR V  E+AK+ A++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIG ++DLE QR V  E+AK+ A++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H+  WL + R+  + N VIILIG ++DLE QR V  E+AK+ A++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 72/137 (52.55%), Postives = 100/137 (72.99%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            +Y+FK ++IGD  VGKS +L +F  ++F  DS  TIGVEF TR + + +K +K QIWDTAGQER+RAVT +YYRGA GA+LVYDI+RR +++H+  WL + R+  + N VI+LIG + DLE QR V  E+A   A++
Sbjct:    6 EYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQ 142          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 98/136 (72.06%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R HA+ N+ I+LIG + DL  +RAV TE+ ++ A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 98/136 (72.06%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R HA+ N+ I+LIG + DL  +RAV TE+ ++ A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
The following BLAST results are available for this feature:
BLAST of FC920798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_PIG2.046e-3652.21Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE2.046e-3652.21Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN2.046e-3652.21Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.046e-3652.21Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB14_DICDI7.776e-3652.55Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
YPTV4_VOLCA1.326e-3550.74GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.326e-3550.74GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2A_RABIT1.326e-3550.74Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB1.326e-3550.74Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE1.326e-3550.74Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC32013B08EF RVDevelop1 Citrus clementina cDNA clone C32013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920798 ID=FC920798; Name=FC920798; organism=Citrus clementina; type=EST; length=712bp
CTCGCCGGGGAGCTCACCCGAGACATACGCTCTAGCCAAGCCATCATCCT
TACAGACACCGCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAAC
TGGTGGAACCCACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTT
TCATCCCACCCAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGT
TGGTCGGTCTTGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGC
CAGCGGAGGAGGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCA
AAGTTGTTTTAATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCA
AGGTTTGCTCGAAGCGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGT
TGAGTTTCAAACTAGGACTTTAGTTATTCAACATAAGAGCGTCAAGGCAC
AGATCTGGGACACTGCTGGCCAAGAACGATACAGGGCTGTTACAAGTGCA
TATTACAGAGGTGCTGTTGGGGCAATGCTGGTTTACGACATTAGCAGACG
CCAGAGCTTTGATCACATACCCCGTTGGCTGGAAGAGTTGCGAAGCCATG
CTGACAAGAATATTGTTATCATTCTCATTGGCAAACAAAGTGACCTTGAG
GAGCAGCGGGCGGTTCCTACAGAAGATGCCAAAGAAATTGCTCAGAAGGA
GGACTATTCTTC
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