FC920798

Overview
NameFC920798
Unique NameFC920798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.732e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.263e-35
Identity = 67/136 (49.26%), Postives = 98/136 (72.06%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I +K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R HA+ N+ I+L+G + DL  +RAV  E+ ++ A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.263e-35
Identity = 69/137 (50.36%), Postives = 100/137 (72.99%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            +++FK +++GDSAVGKS +L +F    F+ +S  TIGVEF +R++ I  K +K QIWDTAGQE++R++T AYYRGAV AM+VYDI+RR SF+ +  WL + R  +  ++  +LIG ++DLE  R V T +AKE A+K
Sbjct:   22 EHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEK 158          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.955e-35
Identity = 68/136 (50.00%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      T+GVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+  WLE+ R H++ N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R H+  N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R H+  N+VI+LIG +SDLE +R V  E+ +  A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE 140          
The following BLAST results are available for this feature:
BLAST of FC920798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_MACFA1.326e-3550.74Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN1.326e-3550.74Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK1.326e-3550.74Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA1.326e-3550.74Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2_LYMST1.732e-3550.74Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_MAIZE2.263e-3549.26Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2B_DICDI2.263e-3550.36Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB2A_RAT2.955e-3550.00Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2B_MOUSE3.859e-3550.74Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN3.859e-3550.74Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC32013B08EF RVDevelop1 Citrus clementina cDNA clone C32013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920798 ID=FC920798; Name=FC920798; organism=Citrus clementina; type=EST; length=712bp
CTCGCCGGGGAGCTCACCCGAGACATACGCTCTAGCCAAGCCATCATCCT
TACAGACACCGCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAAC
TGGTGGAACCCACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTT
TCATCCCACCCAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGT
TGGTCGGTCTTGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGC
CAGCGGAGGAGGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCA
AAGTTGTTTTAATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCA
AGGTTTGCTCGAAGCGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGT
TGAGTTTCAAACTAGGACTTTAGTTATTCAACATAAGAGCGTCAAGGCAC
AGATCTGGGACACTGCTGGCCAAGAACGATACAGGGCTGTTACAAGTGCA
TATTACAGAGGTGCTGTTGGGGCAATGCTGGTTTACGACATTAGCAGACG
CCAGAGCTTTGATCACATACCCCGTTGGCTGGAAGAGTTGCGAAGCCATG
CTGACAAGAATATTGTTATCATTCTCATTGGCAAACAAAGTGACCTTGAG
GAGCAGCGGGCGGTTCCTACAGAAGATGCCAAAGAAATTGCTCAGAAGGA
GGACTATTCTTC
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