FC920798

Overview
NameFC920798
Unique NameFC920798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 67/136 (49.26%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            ++FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I +K++K QIWDTAGQE +R++T +YYRG+ GA+LVYDI+RR +F+H+  WL++ RS+A+ N+ IILIG +SD+E +RAV  E+ ++ A +
Sbjct:    4 FLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADE 139          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.040e-35
Identity = 67/136 (49.26%), Postives = 98/136 (72.06%), Query Frame = 3
Query:  291 YVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I +K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R HA+ N+ I+L+G + DL  +RAV  E+ ++ A++
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKE 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 68/140 (48.57%), Postives = 105/140 (75.00%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQ 695
            N + DY+FK++LIGDS VGKS +L RFA   ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL E+  +A +N+  +L+G +SDL  +R V T+ AKE A+
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAE 141          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 68/141 (48.23%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            N + DY+FK++LIGDS VGKS +L RF+   +     +TIGV+F+ RT+    K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++  +SF+++ +WL E+  +A  N+  +L+G +SDL E RA+P E AK  A +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADE 142          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 67/141 (47.52%), Postives = 99/141 (70.21%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            ++ +DY+FKV+LIGDS VGK+ ++  F    +S   + TIGV+F  R+L I  K VK Q+WDTAGQER+R +T +YYR A  A++ YD++RR +F+ +P W+ E+  +   N+VI+LIG +SDL E+R V  EDA  +A+K
Sbjct:   11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEK 151          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 67/141 (47.52%), Postives = 99/141 (70.21%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            ++ +DY+FKV+LIGDS VGK+ ++  F    +S   + TIGV+F  R+L I  K VK Q+WDTAGQER+R +T +YYR A  A++ YD++RR +F+ +P W+ E+  +   N+VI+LIG +SDL E+R V  EDA  +A+K
Sbjct:   11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEK 151          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 66/143 (46.15%), Postives = 102/143 (71.33%), Query Frame = 3
Query:  279 QKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKED 704
            ++ DY+FK+++IGDS  GKS +L RFA + +S    +TIGV+F+ +T+ I + ++K QIWDTAGQER+R +TS YYRGA G + VYD++ + SFDHI   WL+++  +A  N+  +LIG + DL E R V  ++AK +A++ +
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNN 144          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.278e-34
Identity = 66/139 (47.48%), Postives = 102/139 (73.38%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIA 692
            N + DY+FK++LIGDS VGKS +L RFA   ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ R+S+ ++ +WL+E+  +A +N+  +L+G +SDL  ++ V    AKE A
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFA 140          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 64/137 (46.72%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            D + K++LIGDS VGKS +L RF   +F+     TIG++F+ RT+ I ++ VK Q+WDTAGQER+R +T+AYYRGA+G +LVYD++  +SF++I  W + ++S+A++ + +IL+G + DL+E+R V TE  + +A K
Sbjct:    9 DLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADK 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 62/139 (44.60%), Postives = 101/139 (72.66%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIA 692
            +Q  DY+FK++LIG+S+VGK+  L R+A   F+    +T+G++F+ +T+    K +K QIWDTAGQERYR +T+AYYRGA+G +L+YDI+ ++SF  +  W  ++++++  N  +IL+G + DLE++R VP ED + +A
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLA 154          
The following BLAST results are available for this feature:
BLAST of FC920798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_DICDI3.859e-3549.26Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB2A_MAIZE5.040e-3549.26Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
YPT1_PHYIN6.583e-3548.57Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RBD2A_ARATH1.915e-3448.23Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB19_RAT1.915e-3447.52Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB19_MOUSE1.915e-3447.52Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB1_THEPA2.502e-3446.15Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1B_MACFA7.278e-3447.48Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RYL1_YARLI9.506e-3446.72Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB3D_MOUSE9.506e-3444.60Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC32013B08EF RVDevelop1 Citrus clementina cDNA clone C32013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920798 ID=FC920798; Name=FC920798; organism=Citrus clementina; type=EST; length=712bp
CTCGCCGGGGAGCTCACCCGAGACATACGCTCTAGCCAAGCCATCATCCT
TACAGACACCGCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAAC
TGGTGGAACCCACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTT
TCATCCCACCCAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGT
TGGTCGGTCTTGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGC
CAGCGGAGGAGGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCA
AAGTTGTTTTAATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCA
AGGTTTGCTCGAAGCGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGT
TGAGTTTCAAACTAGGACTTTAGTTATTCAACATAAGAGCGTCAAGGCAC
AGATCTGGGACACTGCTGGCCAAGAACGATACAGGGCTGTTACAAGTGCA
TATTACAGAGGTGCTGTTGGGGCAATGCTGGTTTACGACATTAGCAGACG
CCAGAGCTTTGATCACATACCCCGTTGGCTGGAAGAGTTGCGAAGCCATG
CTGACAAGAATATTGTTATCATTCTCATTGGCAAACAAAGTGACCTTGAG
GAGCAGCGGGCGGTTCCTACAGAAGATGCCAAAGAAATTGCTCAGAAGGA
GGACTATTCTTC
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