FC920798

Overview
NameFC920798
Unique NameFC920798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 65/137 (47.45%), Postives = 98/137 (71.53%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            D++FK++LIGDS VGK+ ++ RF    F+ + + TIGV+F  R + I  K VK Q+WDTAGQER+R +T +YYR A GA++ YDI+RRQSF+ +P W+ E   +   N++++LIG +SDL E+R +  E+A  +A+K
Sbjct:   13 DFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEK 149          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 68/141 (48.23%), Postives = 104/141 (73.76%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            + + DY+FK++LIGDS+VGKS  L RFA   +     +TIGV+F+ RT+ ++ K+VK QIWDTAGQER+R +TS+YYRGA G ++VYDI+  +SF+++ +WL+E+  +A+ ++  +L+G + DL E RAV T  A+  AQ+
Sbjct:    2 SNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQE 142          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 64/137 (46.72%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  288 DYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            DY+ K++LIGDS VGKS +L RF+   F+     TIG++F+ RT+ +  K +K QIWDTAGQER+R +T+AYYRGA+G +L+YD++ ++SFD++  W   +  HA +N+  ILIG + D E+QR V  E  + +A +
Sbjct:    7 DYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADE 143          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 62/139 (44.60%), Postives = 101/139 (72.66%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIA 692
            +Q  DY+FK++LIG+S+VGK+  L R+A   F+    +T+G++F+ +T+    K +K QIWDTAGQERYR +T+AYYRGA+G +L+YDI+ ++SF  +  W  ++++++  N  +IL+G + DLE++R VP ED + +A
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLA 154          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 65/143 (45.45%), Postives = 102/143 (71.33%), Query Frame = 3
Query:  279 QKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQKED 704
            ++ DY+FK+++IGDS  GKS +L RFA + +S    +TIGV+F+ +T+ I + ++K QIWDTAGQER+R +TS YYRGA G + VYD++ + SFDHI   WL+++  +A  N+  +LIG + DL + R V  ++AK +A++ +
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNN 144          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 66/141 (46.81%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            N   DY+FK++LIGDS VGKS +L RFA   ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+G +SDL  ++ V    AKE A +
Sbjct:    5 NPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQ 145          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 62/141 (43.97%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            +Q  DY+FK+++IG+S+VGK+  L R+A   F+    +T+G++F+ +T+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  +IL+G + D+EE+R VPTE  + +A++
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 62/141 (43.97%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            +Q  DY+FK+++IG+S+VGK+  L R+A   F+    +T+G++F+ +T+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  +IL+G + D+EE+R VPTE  + +A++
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 62/141 (43.97%), Postives = 103/141 (73.05%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIAQK 698
            +Q  DY+FK+++IG+S+VGK+  L R+A   F+    +T+G++F+ +T+    K VK QIWDTAGQERYR +T+AYYRGA+G +L+YDI+  +SF+ +  W  ++++++  N  +IL+G + D+EE+R VPTE  + +A++
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156          
BLAST of FC920798 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 66/139 (47.48%), Postives = 102/139 (73.38%), Query Frame = 3
Query:  276 NQKIDYVFKVVLIGDSAVGKSQILARFARSEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGKQSDLEEQRAVPTEDAKEIA 692
            N + DY+FK++LIGDS VGKS +L RFA   ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R VTS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+G +SDL  ++ V    AKE A
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFA 140          
The following BLAST results are available for this feature:
BLAST of FC920798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB19_XENTR9.506e-3447.45Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
YPTM1_MAIZE1.241e-3348.23GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPT2_SCHPO1.241e-3346.72GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB3D_HUMAN1.241e-3344.60Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB1_THEAN1.241e-3345.45Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB1A_LYMST1.241e-3346.81Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB3B_MOUSE1.621e-3343.97Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU1.621e-3343.97Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN1.621e-3343.97Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB1B_RAT1.621e-3347.48Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32013B08EF RVDevelop1 Citrus clementina cDNA clone C32013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920798 ID=FC920798; Name=FC920798; organism=Citrus clementina; type=EST; length=712bp
CTCGCCGGGGAGCTCACCCGAGACATACGCTCTAGCCAAGCCATCATCCT
TACAGACACCGCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAAC
TGGTGGAACCCACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTT
TCATCCCACCCAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGT
TGGTCGGTCTTGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGC
CAGCGGAGGAGGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCA
AAGTTGTTTTAATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCA
AGGTTTGCTCGAAGCGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGT
TGAGTTTCAAACTAGGACTTTAGTTATTCAACATAAGAGCGTCAAGGCAC
AGATCTGGGACACTGCTGGCCAAGAACGATACAGGGCTGTTACAAGTGCA
TATTACAGAGGTGCTGTTGGGGCAATGCTGGTTTACGACATTAGCAGACG
CCAGAGCTTTGATCACATACCCCGTTGGCTGGAAGAGTTGCGAAGCCATG
CTGACAAGAATATTGTTATCATTCTCATTGGCAAACAAAGTGACCTTGAG
GAGCAGCGGGCGGTTCCTACAGAAGATGCCAAAGAAATTGCTCAGAAGGA
GGACTATTCTTC
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