FC920806

Overview
NameFC920806
Unique NameFC920806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.562e-68
Identity = 128/203 (63.05%), Postives = 150/203 (73.89%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.562e-68
Identity = 125/203 (61.58%), Postives = 153/203 (75.37%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V +P V +A IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ  R GKGKMRNRR I R
Sbjct:    9 RPLISVYSEKGE---SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 208          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.370e-68
Identity = 128/203 (63.05%), Postives = 150/203 (73.89%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A  D +K   SQ  R GKGKMRNRR I R
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.090e-66
Identity = 119/203 (58.62%), Postives = 152/203 (74.88%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RP +++ S +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+  R GKGK+RNRR++ R
Sbjct:    5 RPTVSIYSKDGSVS---SETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.030e-65
Identity = 118/203 (58.13%), Postives = 152/203 (74.88%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RP +++ + +G ++   S T+ LP V KA IRPD+V  VH+ ++KN RQPYAVS KAGHQTSAESWGTGRA++RIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH K+N N+KRY           PSL++ARGH+IE +PE+PLVV D+ +S +KT  A+ +LK+I AY D  K  +S+  R GKGK+RNRR++ R
Sbjct:    5 RPTVSIYNKDGSVS---SETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQR 204          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.233e-63
Identity = 120/203 (59.11%), Postives = 147/203 (72.41%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RP +TV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+  R GKGK RNRR+  R
Sbjct:    3 RPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQR 202          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 241.121 bits (614), Expect = 4.233e-63
Identity = 120/203 (59.11%), Postives = 147/203 (72.41%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RP +TV SL G+   +A   +PLP V  A IRPDIV  V ++++KN RQ YAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCRGGRMFAPTK WR+W+ K+N N+KRY            SLV+ARGH++E +PE+PLVVS   ES++KT  A+  LK +GA++D  K   S+  R GKGK RNRR+  R
Sbjct:    3 RPQVTVHSLTGEATANA---LPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQR 202          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.825e-61
Identity = 116/203 (57.14%), Postives = 143/203 (70.44%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RP ++V S   D       T  LP V  A IR D+V FVH+N++KNSRQPYAV+R +G + S ESWGTGRAV+RIPR+ GGGT  +G GAFGNMCRGGRMFAPTKI+RRWHRKIN++QKR+           P+LVM+RGHKIE V E+PLVV D   + EKT  A+  LK +GA  D  +  DS+  R G+GKMRNRRY++R
Sbjct:    4 RPSVSVYSASEDKVV---GTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGKMRNRRYVAR 203          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.153e-60
Identity = 110/181 (60.77%), Postives = 139/181 (76.80%), Query Frame = 1
Query:  148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVV-SDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            V LP+V+   IRPD+V FVH+N++KN+RQ Y  +  AG QTSAESWGTGRAV+RIPRVPG GTHR+GQGAFGNMCRGGRM+ P K WRRW+RK+NVNQKRY           P+LVMARGH+I  + E+PLV+ ++S ++++KT AA+++LK+I AYAD  K  DS+  R G GK RNRRY
Sbjct:   20 VKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRY 200          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.966e-60
Identity = 116/203 (57.14%), Postives = 147/203 (72.41%), Query Frame = 1
Query:   88 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            RPL++V + + + A D +  + LP V KA IRPD+V  VH  + +N+RQ YAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK +RRWHRK+NVNQ+RY           P+LV ++GH I+ V E PLVVSD  + V+KT  A+  L+++  +AD +K   SQ  R G+G MR+RR I+R
Sbjct:    7 RPLVSVYTEKNEPAKDKN--ICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIAR 207          
The following BLAST results are available for this feature:
BLAST of FC920806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_MACFA2.562e-6863.0560S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4A_XENLA2.562e-6861.5860S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB4.370e-6863.0560S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4A_SCHPO4.090e-6658.6260S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4B_SCHPO2.030e-6558.1360S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST4.233e-6359.1160S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST4.233e-6359.1160S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4_TRYBB8.825e-6157.1460S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]
RL4_DICDI1.153e-6060.7760S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_DROME1.966e-6057.1460S ribosomal protein L4 OS=Drosophila melanogaste... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013C05EF RVDevelop1 Citrus clementina cDNA clone C32013C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920806 ID=FC920806; Name=FC920806; organism=Citrus clementina; type=EST; length=697bp
GATGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCC
CCCAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTA
CCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTC
CCTTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTT
TGTCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCA
GGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCC
GTCTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCA
GGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAA
AGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATAC
GCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGC
CCGCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTG
ATTCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAG
CAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGAA
TCGCCCTGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCA
back to top