FC920806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23 Identity = 67/198 (33.84%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 103 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696 V +L+G++ + + LP+V RPDI+ + + RQPY + +G S E+WG G +R+PR G + GGR P K R+W KIN + R LV R H E E+P VVS+ ESV++T +V + IG YAD E+AK+ + R G+GKMR RRY+ + Sbjct: 5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGR-----RAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKK 191
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 66/193 (34.20%), Postives = 91/193 (47.15%), Query Frame = 1 Query: 121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696 D++ ++ + LP+V RPD++ + N QPY AG QTSA SWG+GR V+++PR+ G R Q GGR P K KIN +KR LV ARGHK E+P V D+ E + K + L+ G Y D +AK+ + R GKGK R R+Y +R Sbjct: 8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNR 192
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22 Identity = 62/189 (32.80%), Postives = 90/189 (47.62%), Query Frame = 1 Query: 121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 D+ + LPDV RPD++ N QPY AG +TSA WG+GR S +PR+ + + A RGGR P K K+N ++RY P+LV RGH E E+P+V ++ E ++KT ++ L+ IG Y D +AK + R G+GK+R R+Y Sbjct: 8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLV-----NSSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKY 189
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22 Identity = 63/189 (33.33%), Postives = 91/189 (48.15%), Query Frame = 1 Query: 121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 D+ A V LP V A RPD++ N QPY +G +TSA WG+GR VS +PR+ + + A +GGR P K K+N ++RY P+LV RGH E E+P+V + ES+E+T ++ L+ G Y D +AK + R G+GK+R R+Y Sbjct: 8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLV-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKY 189
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21 Identity = 62/189 (32.80%), Postives = 91/189 (48.15%), Query Frame = 1 Query: 121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 D+ + LP V A RPD++ N QPY S AG +TSA WG+GR VS +PR+ + + A +GGR P K K+N ++RY P+LV RGH E E+P+V + E++E+T ++ L+ G Y D +AK + R G+GK+R R+Y Sbjct: 8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRL-----KNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKY 189
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21 Identity = 67/197 (34.01%), Postives = 93/197 (47.21%), Query Frame = 1 Query: 97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 + V +L+G D + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ E + KT L V K + AD EKAKD + G+ K+R R+Y Sbjct: 3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKY 189
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 64/197 (32.49%), Postives = 96/197 (48.73%), Query Frame = 1 Query: 97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 +TV+ L+GD A T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ G QGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT + +L+ +G +AD E+A + + R G+G +R R+Y Sbjct: 3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY 188
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 64/197 (32.49%), Postives = 96/197 (48.73%), Query Frame = 1 Query: 97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 +TV+ L+GD A T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ G QGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT + +L+ +G +AD E+A + + R G+G +R R+Y Sbjct: 3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY 188
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 103 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696 V+++EG +A D + LP + RPD++ + RQP+ AG +SA WG+GR S +PR+ G + A +GGR P + ++IN +K+ L+ +RGH+ E +PL+ D E++ KT + L IG Y+D E++K+S+ R G+GK+R RRY R Sbjct: 5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNGS-----RAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESRKVRAGRGKLRGRRYKQR 191
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 67/196 (34.18%), Postives = 97/196 (49.49%), Query Frame = 1 Query: 100 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 TV L+G DA S V LP + + + RPD++G S N +Q Y AG +T AES+G+GR ++ IPR R A GR P K + + +N +++ V RGH + ++PLVVSD E + KT AL VL+ +GA AD E+A++ + R G+GK R R+Y Sbjct: 4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAVS-----GRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRSVRAGRGKTRGRKY 188 The following BLAST results are available for this feature:
BLAST of FC920806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920806 ID=FC920806; Name=FC920806; organism=Citrus clementina; type=EST; length=697bpback to top |