FC920806

Overview
NameFC920806
Unique NameFC920806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 67/198 (33.84%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  103 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            V +L+G++  +    + LP+V     RPDI+      +  + RQPY  +  +G   S E+WG G   +R+PR   G      +        GGR   P K  R+W  KIN  + R              LV  R H  E   E+P VVS+  ESV++T    +V + IG YAD E+AK+ +  R G+GKMR RRY+ +
Sbjct:    5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGR-----RAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKK 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 66/193 (34.20%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            D++ ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K    +  L+  G Y D  +AK+ +  R GKGK R R+Y +R
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIRAGKGKRRGRKYKNR 192          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 62/189 (32.80%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            D+       + LPDV     RPD++         N  QPY     AG +TSA  WG+GR  S +PR+       + + A     RGGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  ++ E ++KT   ++ L+ IG Y D  +AK  +  R G+GK+R R+Y
Sbjct:    8 DLTGKVVREIELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLV-----NSSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 63/189 (33.33%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            D+   A   V LP V  A  RPD++         N  QPY     +G +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  ES+E+T   ++ L+  G Y D  +AK  +  R G+GK+R R+Y
Sbjct:    8 DLTGKAVGEVELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLV-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 62/189 (32.80%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            D+       + LP V  A  RPD++         N  QPY  S  AG +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E++E+T   ++ L+  G Y D  +AK  +  R G+GK+R R+Y
Sbjct:    8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRL-----KNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 67/197 (34.01%), Postives = 93/197 (47.21%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT   L V K +   AD EKAKD    + G+ K+R R+Y
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKIKAGRAKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 64/197 (32.49%), Postives = 96/197 (48.73%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            +TV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y     AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + +  R G+G +R R+Y
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY 188          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 64/197 (32.49%), Postives = 96/197 (48.73%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            +TV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y     AG +T+AES G+GR ++ +P+  G       QGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD E+A + +  R G+G +R R+Y
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANG-------QGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY 188          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  103 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            V+++EG +A D    + LP +     RPD++      +    RQP+     AG  +SA  WG+GR  S +PR+  G      + A     +GGR   P    +   ++IN  +K+              L+ +RGH+ E    +PL+  D  E++ KT   +  L  IG Y+D E++K+S+  R G+GK+R RRY  R
Sbjct:    5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNGS-----RAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESRKVRAGRGKLRGRRYKQR 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 67/196 (34.18%), Postives = 97/196 (49.49%), Query Frame = 1
Query:  100 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            TV  L+G    DA S V LP + + + RPD++G   S    N +Q Y     AG +T AES+G+GR ++ IPR       R    A       GR   P K  +   + +N  +++               V  RGH  +   ++PLVVSD  E + KT  AL VL+ +GA AD E+A++ +  R G+GK R R+Y
Sbjct:    4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAVS-----GRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRSVRAGRGKTRGRKY 188          
The following BLAST results are available for this feature:
BLAST of FC920806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_ARCFU9.539e-2333.8450S ribosomal protein L4P OS=Archaeoglobus fulgidu... [more]
RL4_METBU1.627e-2234.2050S ribosomal protein L4P OS=Methanococcoides burt... [more]
RL4_METBF2.125e-2232.8050S ribosomal protein L4P OS=Methanosarcina barker... [more]
RL4_METAC8.075e-2233.3350S ribosomal protein L4P OS=Methanosarcina acetiv... [more]
RL4_METMA1.799e-2132.8050S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_METM52.350e-2134.0150S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_HALSA6.836e-2132.4950S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_HALS36.836e-2132.4950S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_METB68.928e-2130.8150S ribosomal protein L4P OS=Methanoregula boonei ... [more]
RL4_HALLT8.928e-2134.1850S ribosomal protein L4P OS=Halorubrum lacusprofu... [more]

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Properties
Property NameValue
Genbank descriptionC32013C05EF RVDevelop1 Citrus clementina cDNA clone C32013C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920806 ID=FC920806; Name=FC920806; organism=Citrus clementina; type=EST; length=697bp
GATGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCC
CCCAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTA
CCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTC
CCTTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTT
TGTCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCA
GGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCC
GTCTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCA
GGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAA
AGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATAC
GCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGC
CCGCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTG
ATTCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAG
CAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGAA
TCGCCCTGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCA
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