FC920806

Overview
NameFC920806
Unique NameFC920806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 61/197 (30.96%), Postives = 99/197 (50.25%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            ++V  L+G+   +    + LP      +R D++  V  +    S QP      AG +TSA S+G    ++R+PRV G     +G+ A      GGR+  P    +R   ++N+ +K+            P+ V ARGH+  T   +P+++ D  E++ K    + +LK IG   D ++ K+S+G R GKGKMR RRY
Sbjct:   10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRY 196          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 66/197 (33.50%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD  +AKD    + G+ K+R R+Y
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDADLARAKDGIKIKAGRAKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METHJ (50S ribosomal protein L4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 67/200 (33.50%), Postives = 100/200 (50.00%), Query Frame = 1
Query:  103 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSR--QPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRYISR 696
            V +L G +A +    + LP V  +  RPD++    + I++ SR  QP+     AG   SA  WG+GR VS +PR+       + + A     +GGR   P K+ +   R IN  +KR            P LV +RGH       +P V+S   ES++KT   +  L+ +G Y D E+A+ S+  R G+GK+R RRY  R
Sbjct:    5 VLTLTGSVAHE----IELPPVFSSEFRPDLIK--KAVIAQQSRRYQPHGAYVYAGITASAVGWGSGRGVSHVPRLKN-----SSRAAKVPQAKGGREAHPPKVEKVLIRNINQKEKRKALNSAIAATISPELVRSRGHVF--TGSLPYVLSGDFESLKKTKEVIAALRAVGVYGDVERAERSRKVRAGRGKLRGRRYKQR 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  154 LPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            L  V +   RPD++     +      QP  V   AG +TSA+S G G   +R+ R   G       GAF     GGR   P K+ +  H ++N  ++               +V  RGH +ETVP +PL+VSD  ES++KT   L+  K +G   D ++AKD    R G GK+R R+Y
Sbjct:   18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKTKEVLETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 58/197 (29.44%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + + S+ G+M  +    + LP+V    +R DI+      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  +  + KIN  +++               V  RGH+ +   ++P+VV D  E + KT  A+ +LK +G Y D E++++ +  R G+GKMR RRY
Sbjct:    5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRY 192          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 65/197 (32.99%), Postives = 93/197 (47.21%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++             P +V ARGHKIE VP +PLVV+   ES+ KT   L V   +   AD E+AKD    + G+ K+R R+Y
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKDGVKIKAGRAKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 64/197 (32.49%), Postives = 92/197 (46.70%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V +L+G         + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++               +V ARGHKIE VP +PLVV+   ES+ KT   L V K +   AD E+AKD    + G+ K+R R+Y
Sbjct:    3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKIKAGRAKLRGRKY 189          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 63/197 (31.98%), Postives = 92/197 (46.70%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V +LEG+   +    + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R            P LV ARGH ++ VP  PLVV D  + V KT+   ++ K++G + D E+AK +   R GKGKMR RRY
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKIRAGKGKMRGRRY 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PYRFU (50S ribosomal protein L4P OS=Pyrococcus furiosus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 59/180 (32.78%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + LP V     RPD++         +  QP      AG +   E+ G G +++R+ R+     +     AF    RGGR   P K+ +     IN  +KR              LV ARGH I+ VP++PL+V D  + V+KT    ++ K++G + D  +AK+  G R GKGKMR RRY
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRY 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 63/189 (33.33%), Postives = 87/189 (46.03%), Query Frame = 1
Query:  121 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            D++ +    + LP +     RPD++         N  QPY     AG  TSA SWG G  VSR+PR+  G      + A   M RGGR   P    +    KIN  ++             P +V ARGH      E+P+VV    ES+ KTS   + L   G + D  +AK+ +  R GKGK+R RR+
Sbjct:    7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTG-----RRAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFS--GELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGRKVRAGKGKIRGRRF 188          
The following BLAST results are available for this feature:
BLAST of FC920806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_SULAC1.523e-2030.9650S ribosomal protein L4P OS=Sulfolobus acidocalda... [more]
RL4_METM71.523e-2033.5050S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METHJ1.523e-2033.5050S ribosomal protein L4P OS=Methanospirillum hung... [more]
RL4_META32.598e-2033.7150S ribosomal protein L4P OS=Methanococcus aeolicu... [more]
RL4_THEAC5.787e-2029.4450S ribosomal protein L4P OS=Thermoplasma acidophi... [more]
RL4_METM65.787e-2032.9950S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METVS9.871e-2032.4950S ribosomal protein L4P OS=Methanococcus vanniel... [more]
RL4_THEGJ1.684e-1931.9850S ribosomal protein L4P OS=Thermococcus gammatol... [more]
RL4_PYRFU1.684e-1932.7850S ribosomal protein L4P OS=Pyrococcus furiosus G... [more]
RL4_METTP1.684e-1933.3350S ribosomal protein L4P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC32013C05EF RVDevelop1 Citrus clementina cDNA clone C32013C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920806 ID=FC920806; Name=FC920806; organism=Citrus clementina; type=EST; length=697bp
GATGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCC
CCCAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTA
CCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTC
CCTTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTT
TGTCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCA
GGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCC
GTCTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCA
GGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAA
AGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATAC
GCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGC
CCGCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTG
ATTCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAG
CAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGAA
TCGCCCTGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCA
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