FC920806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19 Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = 1 Query: 148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 V LP + +R D++ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ + NV +KR + V ARGH + P+VV+D +++ TS + LK+IG Y D E+ K+ R GKGKMR R+Y Sbjct: 23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKY 197
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THESM (50S ribosomal protein L4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 1 Query: 97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 + V SL G+ + + LP V + RPD++ + QP AG + E+ G GR ++R+ R+ AF RGGR P K+ + IN +K+ LV ARGH I+ +P++PLVV + E V +T+ ++ K++G + D E+AK + R GKGKMR RRY Sbjct: 3 VKVFSLNGEPIEE----ITLPKVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGRGMARVERIKTSPRF----AAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKVRAGKGKMRGRRY 191
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 58/180 (32.22%), Postives = 86/180 (47.78%), Query Frame = 1 Query: 148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V ARGH I+ VP++PL+V D + V KT ++ K++G + D E+AK+ G R GKGKMR RRY Sbjct: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THEON (50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19 Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 1 Query: 97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 + V +LEG+ + + LP+V RPD++ + QP AG + E+ G G ++R+ R+ AF RGGR P K+ + IN ++R LV ARGH ++ VP++PLVV + E V KT+ ++ K++G + D E+AK + R GKGKMR RRY Sbjct: 3 VKVFNLEGEPVEE----IELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRY 191
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19 Identity = 56/180 (31.11%), Postives = 86/180 (47.78%), Query Frame = 1 Query: 148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 + LP V RPD++ + QP AG + E+ G G ++R+ R+ + AF RGGR P K+ + IN ++R +V +RGH ++ VP++PL+V D + V KT ++ K++G + D E+AK+ G R GKGKMR RRY Sbjct: 16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRY 191
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18 Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = 1 Query: 97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 + + S+ G+ + + LP++ S+R D++ IS + RQPY S AG + + G +SR+PR+ GG A G G+ + ++ + IN +++ V RGH+ +P+VV D+ ++KT A+ +LK IG Y D ++K+ + R G+GKMRNRRY Sbjct: 5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRY 192
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18 Identity = 60/197 (30.46%), Postives = 93/197 (47.21%), Query Frame = 1 Query: 97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 + V +LEG+ + + LP V RPD++ + QP +AG + E+ G G ++R+ R+ AF GGR P K+ + IN ++R LV ARGH ++ V ++PLVV+D + V KT+ ++ K++G + D E+AK + R GKGKMR RRY Sbjct: 3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRY 191
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17 Identity = 62/196 (31.63%), Postives = 90/196 (45.92%), Query Frame = 1 Query: 100 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 TV+ L+GD A + V LP V + RPD++ N Q AG +T AES G+GR ++ +PR G Q GR P K + IN +++ V RGH+ + ++PLVVSD E + KT A+ VL+ +G Y D E+A+D + R G+G R R+Y Sbjct: 4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKY 188
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_SULIY (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17 Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 1 Query: 148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ R GKGKMR R+Y Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKY 197
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17 Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 1 Query: 148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687 V LP + +R DI+ V +S QP AG +TSAES+G ++R+PRV +G+ A GGR+ P + ++ ++N +K+ V ARGH + P+VV+D S++ S + L++IG Y D ++ K+ R GKGKMR R+Y Sbjct: 23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKY 197 The following BLAST results are available for this feature:
BLAST of FC920806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920806 ID=FC920806; Name=FC920806; organism=Citrus clementina; type=EST; length=697bpback to top |