FC920806

Overview
NameFC920806
Unique NameFC920806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920806_ssr76 microsatellite FC920806_ssr76:76..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = 1
Query:  148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            V LP +    +R D++  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   + NV +KR             + V ARGH  +     P+VV+D   +++ TS   + LK+IG Y D E+ K+    R GKGKMR R+Y
Sbjct:   23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKY 197          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THESM (50S ribosomal protein L4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V SL G+   +    + LP V +   RPD++         +  QP      AG +   E+ G GR ++R+ R+           AF    RGGR   P K+ +     IN  +K+              LV ARGH I+ +P++PLVV +  E V +T+   ++ K++G + D E+AK +   R GKGKMR RRY
Sbjct:    3 VKVFSLNGEPIEE----ITLPKVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGRGMARVERIKTSPRF----AAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIAATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKVRAGKGKMRGRRY 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 58/180 (32.22%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V ARGH I+ VP++PL+V D  + V KT    ++ K++G + D E+AK+  G R GKGKMR RRY
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THEON (50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V +LEG+   +    + LP+V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R              LV ARGH ++ VP++PLVV +  E V KT+   ++ K++G + D E+AK +   R GKGKMR RRY
Sbjct:    3 VKVFNLEGEPVEE----IELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRY 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PYRHO (50S ribosomal protein L4P OS=Pyrococcus horikoshii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 56/180 (31.11%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V +RGH ++ VP++PL+V D  + V KT    ++ K++G + D E+AK+  G R GKGKMR RRY
Sbjct:   16 IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVRAGKGKMRGRRY 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + + S+ G+   +    + LP++   S+R D++      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A G     G+     +  ++ +  IN  +++               V  RGH+      +P+VV D+   ++KT  A+ +LK IG Y D  ++K+ +  R G+GKMRNRRY
Sbjct:    5 VPIYSINGEKRGE----IDLPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRY 192          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 60/197 (30.46%), Postives = 93/197 (47.21%), Query Frame = 1
Query:   97 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            + V +LEG+   +    + LP V     RPD++         +  QP     +AG +   E+ G G  ++R+ R+           AF     GGR   P K+ +     IN  ++R              LV ARGH ++ V ++PLVV+D  + V KT+   ++ K++G + D E+AK +   R GKGKMR RRY
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRY 191          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 62/196 (31.63%), Postives = 90/196 (45.92%), Query Frame = 1
Query:  100 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            TV+ L+GD A +    V LP V +   RPD++         N  Q       AG +T AES G+GR ++ +PR   G      Q         GR   P K  +     IN  +++               V  RGH+ +   ++PLVVSD  E + KT  A+ VL+ +G Y D E+A+D +  R G+G  R R+Y
Sbjct:    4 TVRDLDGDDAGE----VELPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPR-QNGRAREVPQAV------SGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKY 188          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_SULIY (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+    R GKGKMR R+Y
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKY 197          
BLAST of FC920806 vs. ExPASy Swiss-Prot
Match: RL4_SULIN (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  148 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGNRPGKGKMRNRRY 687
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   ++N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D ++ K+    R GKGKMR R+Y
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGKGKMRGRKY 197          
The following BLAST results are available for this feature:
BLAST of FC920806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_SULSO2.199e-1932.7850S ribosomal protein L4P OS=Sulfolobus solfataric... [more]
RL4_THESM3.751e-1931.4750S ribosomal protein L4P OS=Thermococcus sibiricu... [more]
RL4_PYRAB3.751e-1932.2250S ribosomal protein L4P OS=Pyrococcus abyssi GN=... [more]
RL4_THEON4.899e-1931.4750S ribosomal protein L4P OS=Thermococcus onnurine... [more]
RL4_PYRHO6.398e-1931.1150S ribosomal protein L4P OS=Pyrococcus horikoshii... [more]
RL4_THEVO3.176e-1828.4350S ribosomal protein L4P OS=Thermoplasma volcaniu... [more]
RL4_PYRKO5.417e-1830.4650S ribosomal protein L4P OS=Pyrococcus kodakaraen... [more]
RL4_NATPD1.576e-1731.6350S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_SULIY2.688e-1731.1150S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_SULIN2.688e-1731.1150S ribosomal protein L4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC32013C05EF RVDevelop1 Citrus clementina cDNA clone C32013C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920806 ID=FC920806; Name=FC920806; organism=Citrus clementina; type=EST; length=697bp
GATGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCC
CCCAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTA
CCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTC
CCTTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTT
TGTCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCA
GGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCC
GTCTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCA
GGGAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAA
AGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATAC
GCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGC
CCGCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTG
ATTCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAG
CAGATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGAA
TCGCCCTGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCA
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