FC920808

Overview
NameFC920808
Unique NameFC920808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920808_ssr21 microsatellite FC920808_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.536e-70
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+KG
Sbjct:  100 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKG 186          

HSP 2 Score: 135.961 bits (341), Expect = 3.536e-70
Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            V   LF    A   G    G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG  +I +TATNF PP
Sbjct:    6 VLFLLFLARQASAAGY---GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPG--SITVTATNFCPP 103          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.536e-70
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+KG
Sbjct:  100 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKG 186          

HSP 2 Score: 135.961 bits (341), Expect = 3.536e-70
Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            V   LF    A   G    G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG  +I +TATNF PP
Sbjct:    6 VLFLLFLARQASAAGY---GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPG--SITVTATNFCPP 103          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.739e-69
Identity = 63/87 (72.41%), Postives = 77/87 (88.51%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPNFAQ ++ GGWCNPP+ HFDLA P+FL++AQY+AG+VPV YRRV CR++GGIRFTING  YFNLVL+TNVAGAGD++ VS+KG
Sbjct:  105 FCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKG 191          

HSP 2 Score: 137.117 bits (344), Expect = 1.739e-69
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPELRSA 428
            ++LSL      K    ++ G W +A ATFYGG+DASGTMGGACGYGNLYSQGYG NTAALSTALFN G SCGACF++KC  DP+WC  G   I +T TNF PP    A
Sbjct:    9 ISLSLMMMIMWKSVDGYSSG-WVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGG--TITVTGTNFCPPNFAQA 113          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.553e-69
Identity = 63/84 (75.00%), Postives = 68/84 (80.95%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            G WQ  HATFYGG DASGTMGGACGYGNLY QGYG NTAALSTALFNNGL+CGAC+E+KC  DP+WC      I +TATNF PP
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCL--GSTITVTATNFCPP 109          

HSP 2 Score: 139.428 bits (350), Expect = 8.553e-69
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN    +DNGGWCNPP  HFDLA P FL++AQYRAGIVPVS+RRVPC K+GGIRFTING  YFNLVL++NV GAGD+  VS+KG
Sbjct:  106 FCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKG 192          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.897e-68
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPNFA  +DNGGWCNPP  HFDLA P FL++AQYRAGIVPV++RRVPC K GGIRFTING  YF+LVL+TNV GAGDI  VS+KG
Sbjct:  108 FCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKG 194          

HSP 2 Score: 140.198 bits (352), Expect = 1.897e-68
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPELRSA 428
            G W+  HATFYGG+DASGTMGGACGYGNL+SQGYG+ TAALSTALFN+G  CGACFEL+C  DP+WC PG  +I+++ATNF PP    A
Sbjct:   30 GGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPG--SIIVSATNFCPPNFALA 116          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 5.479e-68
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC---GGDPQWCNPGNPAILITATNFWPP 413
            GG W SAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE++C   GG    C PG  ++++TATNF PP
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPG--SVVVTATNFCPP 146          

HSP 2 Score: 136.732 bits (343), Expect = 5.479e-68
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 660
            F PPN A PSD+GGWCNPPR HFD++ P+F ++A ++AGIVPVSYRRV C+K+GGIRFTING  YFNLVLVTNV GAGD+  V+VK
Sbjct:  143 FCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVK 228          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.981e-67
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD-PQWCNPGNPAILITATNFWPP 413
            G WQ  HATFYGG DASGTMGGACGYGNLYSQGYG +TAALSTALFN GLSCG+C+EL+C GD  + C PG   + +TATNF PP
Sbjct:   26 GQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPP 110          

HSP 2 Score: 137.502 bits (345), Expect = 5.981e-67
Identity = 60/87 (68.97%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+A PSD GGWCNPPR HFDLA P FL++A++ AGIVPVS+RRV C ++GG+RFT+NG  YFNLVLVTNV GAGD+  ++VKG
Sbjct:  107 FCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKG 193          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.435e-62
Identity = 67/106 (63.21%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  102 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFWPP 413
            S A +  AT     P V A   WQ AHATFYGG+DASGTMGGACGYGNLYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNF PP
Sbjct:   18 STAAANTATTTPTNP-VAAPTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPP 121          

HSP 2 Score: 129.028 bits (323), Expect = 1.435e-62
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+RVPC K+GG+RFTING  YF LVLVTNVA AG I  + V G
Sbjct:  118 FCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMG 204          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.436e-62
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+A PSD+GGWCNPPRPHFD+A P + ++  YR GIVPV++RRVPCR+RGG+RFT+ G  YF LVLVTNVA AG +  + V+G
Sbjct:  113 FCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRG 199          

HSP 2 Score: 130.183 bits (326), Expect = 1.436e-62
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = 3
Query:   78 LFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFWPP 413
            +F ++ F S AL   A+   +    FA   W    ATFYGGSDASGTMGGACGYGNLY+QGYG  TAALSTALF++G SCG C+ L C    DP+WC  G  ++ +TATNF PP
Sbjct:    7 VFAVVAFVSYALLAAASTTVE---AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAG-ASVTVTATNFCPP 116          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.199e-62
Identity = 66/113 (58.41%), Postives = 77/113 (68.14%), Query Frame = 3
Query:   90 LCFFSVAL---SLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFWPP 413
            L FF++A    +   TA+   P V     WQ AHATFYGG+DASGTMGG CGYG+LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNF PP
Sbjct:   10 LVFFAIAAVGCTQLTTADDAAPPV-----WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPP 116          

HSP 2 Score: 128.642 bits (322), Expect = 9.199e-62
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + + G
Sbjct:  113 FCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 199          
The following BLAST results are available for this feature:
BLAST of FC920808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPA4_ORYSJ3.536e-7075.86Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI3.536e-7075.86Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP14_ARATH1.739e-6972.41Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA8_ARATH8.553e-6975.00Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ARATH1.897e-6874.71Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA5_ORYSJ5.479e-6876.14Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ5.981e-6772.94Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ORYSJ1.435e-6263.21Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ1.436e-6264.37Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ9.199e-6258.41Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013C07EF RVDevelop1 Citrus clementina cDNA clone C32013C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920808 ID=FC920808; Name=FC920808; organism=Citrus clementina; type=EST; length=676bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGC
AACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCT
CGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCT
GCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTC
AACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
GAGCGTGAAAGGGCCAACACCCATGG
back to top