FC920808

Overview
NameFC920808
Unique NameFC920808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920808_ssr21 microsatellite FC920808_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.564e-61
Identity = 66/112 (58.93%), Postives = 75/112 (66.96%), Query Frame = 3
Query:   84 RMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFWPP 413
            RML     A+   A   A   G      W  AHATFYGG+DASGTMGGACGYGNLY+QGYG  TAALSTALFN+GL+CG C++L C    D  WC PG  ++ ITATNF PP
Sbjct:    6 RMLAAVVCAIMPAAAMAAGGVGALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPG-VSVTITATNFCPP 116          

HSP 2 Score: 128.257 bits (321), Expect = 1.564e-61
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  PSD+GGWCNPPRPHFD+A P + K+  YR GI+PV Y+RVPC K+GG+RFTING  YF LVL+TNV  AG I  + VKG
Sbjct:  113 FCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKG 199          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.040e-61
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            GPW +AHATFYGG DASGTMGGACGYGNLYSQGYG+ TAALSTALF+ GLSCGACFEL C  DPQWC  G  +I++TATNF PP
Sbjct:   36 GPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGR-SIVVTATNFCPP 118          

HSP 2 Score: 111.694 bits (278), Expect = 2.040e-61
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  415 NFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            NF  P   GG C+PP  HFDL+ P++ K+A Y++GI+PV YRRV C++ GGIRFTING  YFNLVLVTNV GAGD+  VS+KG
Sbjct:  114 NFCPP---GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKG 193          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.517e-61
Identity = 59/87 (67.82%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + V G
Sbjct:  131 FCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMG 217          

HSP 2 Score: 126.331 bits (316), Expect = 4.517e-61
Identity = 58/84 (69.05%), Postives = 65/84 (77.38%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFWPP 413
            W  AHATFYGG+DASGTMGGACGYG+LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNF PP
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPG-VTVTITATNFCPP 134          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.220e-60
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + + G
Sbjct:  129 FCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 215          

HSP 2 Score: 122.479 bits (306), Expect = 2.220e-60
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFWPP 413
            W  AHATFYGG+DASGTMGGACGY +LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + +TATNF PP
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTVTATNFCPP 132          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.423e-59
Identity = 67/115 (58.26%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFWPP 413
            MA  RML   +   +L  TA+A          W  A ATFYGGSDASGTMGGACGYG+LY  GYG  TAALSTALFN G SCGACF + C     QWC PG  +I +TATNF PP
Sbjct:    1 MAAARMLVLLASLCALLLTASA--------AKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGT-SITVTATNFCPP 106          

HSP 2 Score: 123.25 bits (308), Expect = 1.423e-59
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+A   D GGWCNPPR HFD++ P +  +A YRAGIVPV+YRRVPC++ GGIRF +NG  YF LVLVTNV G+G + ++ +KG
Sbjct:  103 FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKG 189          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.152e-59
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            PPN  Q +DNGGWCNPPR HFDL+MP FL++AQ +AGIVP+SYRRVPC K GGIR+TI G  YFNLV+V+NV GAGD+  +SVKG
Sbjct:  122 PPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKG 206          

HSP 2 Score: 115.931 bits (289), Expect = 3.152e-59
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 3
Query:   99 FSVALSLFATANAKIP---GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            F VAL+    A  K+    G F  GPW+ AHATFYGG D SGT+ GACGY +   +GYGV T A+ST LF  G  CGAC+E+KC   P  C  G   +++TATN  PP
Sbjct:   16 FLVALAAGDAAPPKVHRNHGKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPP 123          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.153e-59
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 660
            P N A P D GGWCNPP  HFDL+ P FL++A++++GIVPVSYRRV CR++GG+RFTING  YFNLVLV+NV GAGD+  V+VK
Sbjct:  116 PANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVK 199          

HSP 2 Score: 122.094 bits (305), Expect = 3.153e-59
Identity = 62/114 (54.39%), Postives = 78/114 (68.42%), Query Frame = 3
Query:   87 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC----GGDPQWCNP--GNPAILITATNFWP 410
            +L   S++ SL +++ A      A G W  AHATFYGG+DASGTMGGACGYGN Y QGYG +TAALS  +F +GLSCGACFEL+C    GGD + C P     +I++TAT+  P
Sbjct:    9 LLVLLSLSSSLSSSSAA------AAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCP 116          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.837e-58
Identity = 63/116 (54.31%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFWPP 413
            M + R     + AL + + + A      A G W S  ATFYGG DASGTMGGACGYGNLY+QGYGV  AALSTALFN G SCG C+ + C     P+WC  G  A+ ITATN  PP
Sbjct:    1 MMVIRFFAVLAAALCITSASAA------AAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGT-AVTITATNLCPP 109          

HSP 2 Score: 122.479 bits (306), Expect = 5.837e-58
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            PPN+A  +D+GGWCNPPRPHFD++ P +  +  YRAGIVPV Y++V C ++GG+RFT++GF YF LVL+TNVAG+G +  +SVKG
Sbjct:  108 PPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKG 192          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.293e-57
Identity = 55/86 (63.95%), Postives = 70/86 (81.40%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGP 666
            PPN+A  S++GGWCNPPR HFD+A P +L++  Y+AGIVPV Y+RVPC K+GG+RFT+ GF YF LVL++NVAG+G I  V VKGP
Sbjct:  113 PPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGP 198          

HSP 2 Score: 117.857 bits (294), Expect = 1.293e-57
Identity = 54/84 (64.29%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFWPP 413
            W S  ATFYGGSDASGTMGGACGYGNLY  GYG NTAALS+ALFN+G SCG C+++ C    +P+WC  G   + IT TN  PP
Sbjct:   32 WSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGR-TVTITGTNLCPP 114          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 8.280e-57
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            PPN+A P+D GGWCNPPR HFD+A P +LK+  Y  GIVPV Y+RVPC K+GG+RFTING  YF LVLV+NV G G I  VS+KG
Sbjct:  115 PPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKG 199          

HSP 2 Score: 115.546 bits (288), Expect = 8.280e-57
Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  153 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFWPP 413
            F    W  A ATFYGGSDASGTMGGACGYG+LYS GYG NTAALST LFN+G SCG C+ + C    D ++C  G  ++ ITATN  PP
Sbjct:   29 FTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGT-SVTITATNLCPP 116          
The following BLAST results are available for this feature:
BLAST of FC920808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXP13_ORYSJ1.564e-6158.93Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH2.040e-6178.57Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP22_ORYSJ4.517e-6167.82Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ2.220e-6066.67Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.423e-5958.26Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP32_ORYSJ3.152e-5970.59Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ3.153e-5966.67Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ5.837e-5854.31Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.293e-5763.95Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ8.280e-5765.88Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC32013C07EF RVDevelop1 Citrus clementina cDNA clone C32013C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920808 ID=FC920808; Name=FC920808; organism=Citrus clementina; type=EST; length=676bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGC
AACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCT
CGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCT
GCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTC
AACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
GAGCGTGAAAGGGCCAACACCCATGG
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