FC920808

Overview
NameFC920808
Unique NameFC920808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920808_ssr21 microsatellite FC920808_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.138e-51
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  102 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            +V +SL A A   +   F    W  AHATFYG   AS TMGGACGYGNLY+ GYG +TAALST LF +G  CG C++++C G    C  G+PAI +TATN  PP
Sbjct:   16 AVIISL-AGAATTVDAKFRAMQWTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPP 117          

HSP 2 Score: 109.383 bits (272), Expect = 2.138e-51
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  409 PPNFAQPSDNGG--WCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 660
            PPN+A+  D GG  WCNPPR HFDL+ P F+++A +RAGIVPV YRRVPC + GG+RF + G  Y+ L  V NVAGAGD+  + VK
Sbjct:  116 PPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVK 201          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.162e-51
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PP+F +P+DN  WCNPP+ HFDL+ PMFLK+A+Y+AG+VPV +RRVPC K GG++F I G  +F ++L  NV GAG +  + +KG
Sbjct:  166 FCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKG 250          

HSP 2 Score: 110.923 bits (276), Expect = 6.162e-51
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPE 416
            W    ATFYG  +   T  GACGYG+L+ QGYG+ TAALSTALFNNG  CGAC+E+ C   PQWC PG  +I ITATNF PP+
Sbjct:   90 WGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPG--SIKITATNFCPPD 170          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.367e-50
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPE 416
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG  ++ ITATNF PP+
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPG--SVKITATNFCPPD 128          

HSP 2 Score: 107.457 bits (267), Expect = 1.367e-50
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG
Sbjct:  124 FCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 208          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.369e-50
Identity = 53/88 (60.23%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFWPP 413
            A   W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFN+G SCG C+ + C     P WC  G  AI +T TN+ PP
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPP 105          

HSP 2 Score: 108.227 bits (269), Expect = 1.369e-50
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            PPN+  P   GGWCN  RPHFD++ P +  +  Y AGI+P+ Y++V C + GG+RFTINGF YF LVLVTN+AG+G I  +SVKG
Sbjct:  104 PPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKG 186          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.322e-50
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPE 416
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG   I ITATNF PP+
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPG--TIKITATNFCPPD 135          

HSP 2 Score: 107.457 bits (267), Expect = 2.322e-50
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG
Sbjct:  131 FCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 215          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.149e-50
Identity = 54/84 (64.29%), Postives = 59/84 (70.24%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFWPP 413
            W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFNNG SCG C+ + C  D  P  C  G  AI +T TNF PP
Sbjct:   23 WLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPP 105          

HSP 2 Score: 105.145 bits (261), Expect = 5.149e-50
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPN+  P   GGWCN  RPHFD++ P +  +  Y AGIVP+ Y++V C + GG+RFTI G  YF LVLVTN+AG+G I  +SVKG
Sbjct:  102 FCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKG 186          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.591e-47
Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNF 404
            A   W    ATFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ + C  G  P WC  G  AI +T TN+
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY 102          

HSP 2 Score: 100.908 bits (250), Expect = 8.591e-47
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  439 GGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            GGWCN  RP+FD++ P +  +  Y AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G IV +SVKG
Sbjct:  103 GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKG 177          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 7.133e-46
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 660
            PPN+  P+D+GGWCNPPR HFD+A P FLKLAQ  AGIVPV YRRVPC++ GG+RF + G  Y+ L+ V NV GAGD+  +SVK
Sbjct:  133 PPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVK 216          

HSP 2 Score: 86.6557 bits (213), Expect = 7.133e-46
Identity = 43/84 (51.19%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            W    ATFYG     G   GGACGY  N     Y   TAALST LF +G  CG C+EL+C   P WCNPG+P+++IT TN  PP
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPP 134          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.806e-42
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  415 NFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-RAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            NF   ++N GWCN PR HFD++ P F ++A+    GIVPV YRRV C++RGG+RFT+ G   FN+V+++NV G G +  V+V+G
Sbjct:  105 NFCPTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRG 188          

HSP 2 Score: 95.9005 bits (237), Expect = 5.806e-42
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFWP 410
            W  AHAT+YG +D+  ++GGACGY N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC  G  A+ +TATNF P
Sbjct:   27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCP 108          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.559e-42
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F  PN+    D GG CNPP  HF L +  F K+A ++AG +PV YRR+ CRK G +RFT++G   F  VL+TNVAG+GDI  V +KG
Sbjct:  117 FCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKG 203          

HSP 2 Score: 95.1301 bits (235), Expect = 7.559e-42
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            W+ A AT+Y  ++    +GGACGYG+L   GYG+ T  LS  LF  G  CGACFEL+C  D +WC PG  +I++TATNF  P
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAP 120          
The following BLAST results are available for this feature:
BLAST of FC920808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXP30_ORYSJ2.138e-5153.85Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP24_ARATH6.162e-5155.17Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP23_ARATH1.367e-5060.24Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP19_ORYSJ1.369e-5060.23Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH2.322e-5061.45Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP18_ORYSJ5.149e-5064.29Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ8.591e-4760.00Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ7.133e-4663.10Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH5.806e-4250.00Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP13_ARATH7.559e-4251.72Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32013C07EF RVDevelop1 Citrus clementina cDNA clone C32013C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920808 ID=FC920808; Name=FC920808; organism=Citrus clementina; type=EST; length=676bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGC
AACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCT
CGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCT
GCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTC
AACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
GAGCGTGAAAGGGCCAACACCCATGG
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