FC920808

Overview
NameFC920808
Unique NameFC920808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920808_ssr21 microsatellite FC920808_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.811e-40
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F  PNF  P+D GG CNPP  HF L +  F K+A ++AG++P+ YRRV C + GG+RF + G  +F  VL++NV GAGD+  V +KG
Sbjct:  109 FCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKG 195          

HSP 2 Score: 90.1225 bits (222), Expect = 1.811e-40
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  147 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            G  A   W+SA A++Y  +D    +GGACG+G+L   GYG+ T  LSTALF  G +CG C+E+KC  D ++C PG  +I++TATNF  P
Sbjct:   26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAP 112          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.959e-39
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            W  A A +YG     GT + GACGYG+L   GYG+ TAALSTALFN+G SCGAC+E+ C  +PQ C  G  +I ITAT+  PP
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSG--SIKITATDLCPP 125          

HSP 2 Score: 90.1225 bits (222), Expect = 1.959e-39
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  445 WCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            WC  P  HFDL++PMF+K+AQ +A +VPV YRRVPC K GG++F + G      +L  NV GAGDI+ VS KG
Sbjct:  129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKG 201          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.940e-38
Identity = 53/98 (54.08%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  135 AKIPGVFAG----GPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            AK+P V  G    GPW   HATFYGG DASGT  GGACGY +  + GYG  TAA+S ALF+NG  CGAC+ELK  GD          +++TATN  PP
Sbjct:   67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPP 154          

HSP 2 Score: 86.6557 bits (213), Expect = 7.940e-38
Identity = 37/66 (56.06%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  466 HFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            HFDL MP FL +A+ + G+VPVSYR+V C ++GGI++TI G   +N+V+V NV GAGD+V+++VKG
Sbjct:  163 HFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKG 228          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.955e-38
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGPT 669
            F PPN    SD GGWCN P+ H +L+   F  +A+ RA ++P+ YRRV C +RGG+RF+++G  +F  VL++NV   G++V V VKG T
Sbjct:  108 FCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHT 196          

HSP 2 Score: 85.5001 bits (210), Expect = 7.955e-38
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 3
Query:   90 LCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPP 413
            LC F +   LF           A   W+ A AT     D S ++  GGACGYG+L    +   +A LS  LFN G SCGAC E++C    +WC  G+P++++TAT+F PP
Sbjct:   10 LCLFFILCRLFQAT--------AEDDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPP 111          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.757e-34
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F  PN     D GGWCN P+ HF+++   FL++A+ +A IVPV +RRV C + GG+RFTI G   F  VL+TNVA  G++  V VKG
Sbjct:  112 FCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKG 198          

HSP 2 Score: 73.559 bits (179), Expect = 3.757e-34
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  222 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPEL 419
            GGACGYG+L    YG  TA +S ALF  G +CG C+E++C     WC  G+P +++TAT+F  P L
Sbjct:   52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNL 117          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F PPNFAQ SDNGGWCNPPRPHFD+A P FL +A+Y+AGIVP+ Y++V CR+ GG+RFTING  YF LVL++NVAG G+I +V +KG
Sbjct:  107 FCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKG 193          

HSP 2 Score: 129.798 bits (325), Expect = 1.282e-29
Identity = 68/113 (60.18%), Postives = 74/113 (65.49%), Query Frame = 3
Query:  138 KIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFWPPELRSALR*WRVVQPSSPSF 470
            KI  V AG  W  AHATFYGGSDASGTMGGACGYGNLY+ GY  NTAALSTALFN+G SCG C+++ C     PQWC  G  +I ITATNF PP    A        P  P F
Sbjct:   20 KISSVSAG--WLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGK-SITITATNFCPPNFAQASDNGGWCNPPRPHF 129          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  409 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            PPN+A   D GGWCNPPRPHFD+A P F ++AQ RAG+VPV YRRV C K+GGIRFTI G  YFNLVLVTNV GAGD+  VSVKG
Sbjct:  104 PPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKG 188          

HSP 2 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 81/158 (51.27%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGP--WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPELRSALR*WRVVQPSSPSF---RSGHAYVPQARP--VPRWYR 524
            M L R+L   +VA        A    V AGG   W S  ATFYGGSDASGTMGGACGYGNLYS GYG +TAALSTALFNNG SCGACFE++CGG    C  G   + +TATN  PP    A        P  P F         + QAR   VP  YR
Sbjct:    1 MELLRLLAVAAVA--------AMAAEVAAGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAG--TVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYR 147          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.622e-24
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPELRSALR*W 440
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNF P         W
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDLW 146          

HSP 2 Score: 107.071 bits (266), Expect = 8.978e-23
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 660
            F P N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V VK
Sbjct:  134 FCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVK 217          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.622e-24
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPELRSALR*W 440
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNF P         W
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDLW 140          

HSP 2 Score: 109.383 bits (272), Expect = 1.809e-23
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  403 FGPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG 663
            F P N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V VKG
Sbjct:  128 FCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKG 212          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.644e-15
Identity = 32/102 (31.37%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   87 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILI 389
            ++ F ++A  +  ++ A +        W    AT+YG ++ SGT GGACGY G++    +    AA S +++ +G  CG+C+++KC G+P  C+ G P  ++
Sbjct:   11 IVAFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKPVTVV 110          

HSP 2 Score: 40.4318 bits (93), Expect = 3.644e-15
Identity = 28/83 (33.73%), Postives = 39/83 (46.99%), Query Frame = 1
Query:  439 GGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 657
            GG C     HFDL+   F  +A+         AG +PV Y RVPC+ +G     R      +Y+  VLV +  G GD+  V +
Sbjct:  117 GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDL 199          
The following BLAST results are available for this feature:
BLAST of FC920808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXP10_ORYSJ1.811e-4049.43Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH1.959e-3955.42Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP26_ORYSJ7.940e-3854.08Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH7.955e-3847.19Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP16_ORYSJ3.757e-3449.43Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH4.749e-3267.82Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP11_ORYSJ1.382e-3171.76Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH1.622e-2457.14Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH1.622e-2457.14Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXB14_ORYSJ3.644e-1531.37Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC32013C07EF RVDevelop1 Citrus clementina cDNA clone C32013C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920808 ID=FC920808; Name=FC920808; organism=Citrus clementina; type=EST; length=676bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGC
AACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCT
CGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCT
GCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTC
AACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
GAGCGTGAAAGGGCCAACACCCATGG
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