FC920808

Overview
NameFC920808
Unique NameFC920808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920808_ssr21 microsatellite FC920808_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 7.995e-15
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILIT 392
            G  W S  AT+YGG    G+ GGACGY +   Q  +    AA   +LF NG  CG+C+++KC G+ + C+     ++IT
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVIT 119          

HSP 2 Score: 39.6614 bits (91), Expect = 7.995e-15
Identity = 24/82 (29.27%), Postives = 38/82 (46.34%), Query Frame = 1
Query:  439 GGWCNPPRPHFDLAMPMFLKLAQY-------RAGIVPVSYRRVPCRKRGGIRFTINGFR--YFNLVLVTNVAGAGDIVRVSV 657
            GG C     HFD++   F  +A          AG++ + Y+RVPCR    + F ++     Y+  +LV    G GD+  V +
Sbjct:  124 GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHI 205          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.459e-14
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWPPEL 419
            GG W +A AT+YG  + +G    GGACG+ N+    +   T+  +  LF +G  CG+C++++C G P  C+     ++IT  N++P  L
Sbjct:   89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSL 176          

HSP 2 Score: 32.3426 bits (72), Expect = 6.459e-14
Identity = 23/74 (31.08%), Postives = 37/74 (50.00%), Query Frame = 1
Query:  466 HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSV 657
            HFDL+   F  +A+         AGI+ + +RRVPC+  G  + F +       +  +LV    G GD+V+V +
Sbjct:  178 HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDL 251          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 3.126e-13
Identity = 28/75 (37.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILI 389
            W +  AT+YG ++ +G+ GGACGY G ++   +    AA S +++ +GL CG+C+++KC G+   C+ GNP  ++
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNPVTVV 109          

HSP 2 Score: 33.4982 bits (75), Expect = 3.126e-13
Identity = 30/85 (35.29%), Postives = 40/85 (47.06%), Query Frame = 1
Query:  439 GGWCNPPRPHFDLAMPMFLKLA------QYRA-GIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDIVRVSV 657
            GG C     HFDL+   F  +A      Q RA G++ + Y RVPC   GG++ T      +   YF  VLV    G GD+  V +
Sbjct:  116 GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDLSGVEL 198          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 5.274e-13
Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILIT 392
            +  S  AT N  +    +   W  A AT+YG  +  G+ GGACGYG L   +       A++  LF NG  CGAC++++C  D   C+     ++IT
Sbjct:   19 IGSSALATTNRHV----SNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICSRRAVTVIIT 110          

HSP 2 Score: 36.1946 bits (82), Expect = 5.274e-13
Identity = 26/81 (32.10%), Postives = 40/81 (49.38%), Query Frame = 1
Query:  448 CNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVK 660
            C+    HFDL+  +F +LA           G++PV YRR  C+ RG  I F +N     ++  +LV    G GDI  + ++
Sbjct:  116 CSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIR 196          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.152e-12
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWP 410
            GPW  A AT+YG  + +G    GGACG+ +     +   T+  +  LF +G  CG+C++++C  D Q C+  +  ++IT  N++P
Sbjct:   53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKD-QSCSGRSETVIITDMNYYP 136          

HSP 2 Score: 32.3426 bits (72), Expect = 1.152e-12
Identity = 26/75 (34.67%), Postives = 38/75 (50.67%), Query Frame = 1
Query:  466 HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTINGFR---YFNLVLVTNVAGAGDIVRVSV 657
            HFDL+   F +LA+         +GI+ + + RVPC   G  I F +  +    YF  VLV    G GD+V+V +
Sbjct:  141 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDL 214          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.500e-12
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFWP 410
            G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFE+KC   P  C+ G P ++ IT  N+ P
Sbjct:   47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECS-GKPVVVHITDMNYEP 131          

HSP 2 Score: 38.1206 bits (87), Expect = 1.500e-12
Identity = 29/75 (38.67%), Postives = 38/75 (50.67%), Query Frame = 1
Query:  466 HFDLAMPMFLKLAQY-------RAGIVPVSYRRVPCRKRGGIRFTIN---GFRYFNLVLVTNVAGAGDIVRVSVK 660
            HFDLA   F  +A+        +AGI+ + +RRV C+    + F +    G  Y  L LV  V G GDIV V VK
Sbjct:  136 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVK 209          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.521e-12
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  144 PGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILI 389
            P V     W +A AT+YG  +  G+ GGACGY     Q  +    AA S +L+  G  CGAC+E+KC  +   C+ G PA ++
Sbjct:   56 PSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CS-GQPATVV 136          

HSP 2 Score: 34.2686 bits (77), Expect = 2.521e-12
Identity = 34/95 (35.79%), Postives = 44/95 (46.32%), Query Frame = 1
Query:  439 GGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI----NGFRYFNLVLVTNVAGAGDIVRVSVK----GPTPM 675
            GG C     HFD++      +A+         AGI+ V YRRVPC+  G  I F +    N F YF  VL+    G GD+  V +     G TPM
Sbjct:  143 GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDLNAVDLMEAGCGWTPM 235          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 2.526e-12
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKC 341
            W+ A AT+YG ++  G+ GGACGYG+L           ++S  LF +G  CGAC+++KC
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC 106          

HSP 2 Score: 34.2686 bits (77), Expect = 2.526e-12
Identity = 28/84 (33.33%), Postives = 39/84 (46.43%), Query Frame = 1
Query:  439 GGWCNPPRPHFDLAMPMFLKLAQYRA-------GIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVK 660
            GG C   R HFDL+   F ++A   A       G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K
Sbjct:  127 GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDIGSMQIK 210          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.528e-12
Identity = 36/108 (33.33%), Postives = 52/108 (48.15%), Query Frame = 3
Query:   78 LFRMLCFFSV--ALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILIT 392
            L R + F S+  A  +F +  A          W  A AT+YG +D  G+ GGACGYG L           A+S  LF  G  CGAC++++C  D   C+     +++T
Sbjct:   13 LIRSVLFVSLLSAAFVFDSGEAGAAHRVVDPEWHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICSRRAVTVIVT 119          

HSP 2 Score: 33.113 bits (74), Expect = 2.528e-12
Identity = 28/84 (33.33%), Postives = 38/84 (45.24%), Query Frame = 1
Query:  439 GGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVK 660
            GG C   R HFDL+   F +LA           G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K
Sbjct:  124 GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLK 207          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.529e-12
Identity = 30/86 (34.88%), Postives = 43/86 (50.00%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWP 410
            G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFE+KC   P  C+     + IT  N+ P
Sbjct:   46 GSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEP 130          

HSP 2 Score: 35.4242 bits (80), Expect = 2.529e-12
Identity = 26/74 (35.14%), Postives = 37/74 (50.00%), Query Frame = 1
Query:  466 HFDLAMPMFLKLAQY-------RAGIVPVSYRRVPCRKRGGIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVK 660
            HFDLA   F  +A+        +AGI+ + +RRV C+    + F +      N   +LV  V G GDIV V +K
Sbjct:  135 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIK 208          
The following BLAST results are available for this feature:
BLAST of FC920808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPB5_ORYSJ7.995e-1539.24Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB7_ORYSJ6.459e-1434.83Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB15_ORYSJ3.126e-1337.33Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH5.274e-1334.02Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXPB4_ORYSJ1.152e-1234.12Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_MAIZE1.500e-1236.78Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXB11_ORYSJ2.521e-1238.55Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB17_ORYSJ2.526e-1242.37Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ2.528e-1233.33Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_MAIZE2.529e-1234.88Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32013C07EF RVDevelop1 Citrus clementina cDNA clone C32013C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920808 ID=FC920808; Name=FC920808; organism=Citrus clementina; type=EST; length=676bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGC
AACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCT
CGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCT
GCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTC
AACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
GAGCGTGAAAGGGCCAACACCCATGG
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