FC920808

Overview
NameFC920808
Unique NameFC920808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920808_ssr21 microsatellite FC920808_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 7.545e-11
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 3
Query:   81 FRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQG--YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFWP 410
            F +L  F+V+L      N  I    +G    +A  T+YG    +G+ GGACGYG+  +    Y + +A    +LFNNG  CG C+++ C G P  C+ G+P I +T T+  P
Sbjct:    8 FALLALFAVSLKFCYCQNETIDVAGSG----TAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAG-GPSLFNNGKGCGTCYQVVCIGHPA-CS-GSP-ITVTITDECP 111          

HSP 2 Score: 28.8758 bits (63), Expect = 7.545e-11
Identity = 25/84 (29.76%), Postives = 34/84 (40.48%), Query Frame = 1
Query:  439 GGWCNPPRPHFDL---AMPMFLKLAQY----RAGIVPVSYRRVPCRKRGG---IRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 660
            GG C     H DL   AM    K  Q      AG++ V+Y+R  C  RG     R       Y+   +V    G GD+  V ++
Sbjct:  112 GGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQ 195          
BLAST of FC920808 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 9.789e-11
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFWP 410
            G  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CFE+KC   P+ C+ G P ++ IT  N  P
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC-TKPEACS-GEPVVVHITDDNEEP 122          

HSP 2 Score: 31.5722 bits (70), Expect = 9.789e-11
Identity = 24/76 (31.58%), Postives = 37/76 (48.68%), Query Frame = 1
Query:  466 HFDLAMPMFLKLAQY-------RAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 660
            HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V +K
Sbjct:  127 HFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIK 202          
The following BLAST results are available for this feature:
BLAST of FC920808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPB4_ARATH7.545e-1135.71Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
MPAP1_PHLPR9.789e-1136.78Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]

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Properties
Property NameValue
Genbank descriptionC32013C07EF RVDevelop1 Citrus clementina cDNA clone C32013C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920808 ID=FC920808; Name=FC920808; organism=Citrus clementina; type=EST; length=676bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGC
AACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCT
CGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCT
GCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTC
AACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
GAGCGTGAAAGGGCCAACACCCATGG
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