FC920810

Overview
NameFC920810
Unique NameFC920810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 65/187 (34.76%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTA 652
            CG G   G   +G G  G       +  +++   F  +        C  + FYT  AF+ A K +P F + G++   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM +
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINK-SNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 63/179 (35.20%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  119 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 646
            G G   G    G G+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINK-SNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 63/185 (34.05%), Postives = 89/185 (48.11%), Query Frame = 2
Query:  101 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 646
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++  F N       KREIAAFFA    ET                CYI +++    DYC    +  PC    +YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 66/189 (34.92%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 646
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F         KREIAAFFA    ET                CYI +++  + DYC    +  PC    +YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232          
BLAST of FC920810 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 64/181 (35.36%), Postives = 87/181 (48.07%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC----YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 646
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA    ET               +CYI ++   + DYC        PC     Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of FC920810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_MAIZE1.098e-2634.76Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE3.532e-2535.20Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ7.869e-2534.05Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ1.342e-2434.92Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.531e-2335.36Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC32013C11EF RVDevelop1 Citrus clementina cDNA clone C32013C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920810 ID=FC920810; Name=FC920810; organism=Citrus clementina; type=EST; length=700bp
GACACAAGTAAAGGATAATTTCTATCATAACTCTTGCTTTCAAATGAGGC
TCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGA
GGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
TGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCGCCC
TGCGTCCGACTACTGTTATCGTTACTGTCCATGTCCTTTGCCAGGGCAAT
ACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGG
TGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTTCTTGC
CACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTG
CACAGCCACCCAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAA
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