FC920815

Overview
NameFC920815
Unique NameFC920815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10680 contig Ccv1_Contig10680:104..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.341e-20
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  277 ISVLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYD-LPLGRRDSK-TFATVVN--LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHC 636
            +    G  SEQ ++ +  +R    K+V  ++  + KEC   VSCADI+AL+ARD + +  GP  + +  GRRDS+ ++   V   +P+   + + +++ F     +   TVAL G H+VG  HC
Sbjct:   83 LETARGVESEQKSKRSFGMRN--FKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGIDVEATVALLGAHSVGRVHC 204          

HSP 2 Score: 49.6766 bits (117), Expect = 2.341e-20
Identity = 21/52 (40.38%), Postives = 30/52 (57.69%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            L   +Y +SCPK E I+R+Q++    K    A   +R  FHDC V+ CD S+
Sbjct:   30 LEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASL 81          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.044e-20
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  349 KFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRD---SKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHC 636
            +++++++  + +EC  VVSC+DIL L+AR+ +   GGP   L  GRRD   S+T      LP    + +V+L  F+    +    VAL G H+VG  HC
Sbjct:  106 RYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHC 204          

HSP 2 Score: 49.2914 bits (116), Expect = 3.044e-20
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 2
Query:  125 GLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            GL   FY  +CP+ E IVR+Q++   K+    A   +R  FHDC V+ CD S+
Sbjct:   30 GLMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASL 82          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER66_ARATH (Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  187 DPKCPEKRYRP---SCWLDSHPFPRLLRSGM*WISVLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT--VVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            DPK P +  R     C++       LL S          + +E++  PN+S+R  +   ++D + ++ K C R VSCAD++A+AARD V LSGGP + +  GR+D          NLP P  N + ++  F  +  + ++ V LSGGHT+G +HC +F
Sbjct:   53 DPKVPARLLRMFFHDCFIRGCDASILLDS-------TRSNQAEKDGPPNISVR--SFYVIEDAKRKLEKACPRTVSCADVIAIAARDVVTLSGGPYWSVLKGRKDGTISRANETRNLPPPTFNVSQLIQSFAARGLSVKDMVTLSGGHTIGFSHCSSF 201          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.113e-19
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  400 VSCADILALAARDSVALSGGPNYDLPLGRRDSKTF---ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTIAS 657
            VSCADIL++AARDS     G  Y + LGR+D++T         L  P  N T  L  F  K FN  E VAL G HT+G A CP   I++
Sbjct:  153 VSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARCPLLCIST 241          

HSP 2 Score: 41.9726 bits (97), Expect = 7.113e-19
Identity = 19/50 (38.00%), Postives = 30/50 (60.00%), Query Frame = 2
Query:  146 DQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVF*RD 295
            D++C  + S V++ +  A+  +  + A LIR+ FHDCFV GCD  +   D
Sbjct:   67 DEAC--VFSAVKEVVVAAINAEARMGASLIRLFFHDCFVDGCDAGLLLND 114          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.206e-18
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  298 TSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF---ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            TSE++A  N SL  +A   +  ++  V  +C  +VSC+DIL  A R  +++ GGP  ++  GR+DS           L  P      I++ F       +E VAL G HT+G +HC  F
Sbjct:   82 TSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQEMVALVGAHTIGFSHCKEF 200          

HSP 2 Score: 42.3578 bits (98), Expect = 1.206e-18
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            LS  +Y ++CP+ E  + + + +        A G +R+ FHDC V GCD S+
Sbjct:   22 LSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASI 73          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER43_ARATH (Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  277 ISVLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSK--TFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHC 636
            I V  G+ SE+NA  +  +R    + V+ ++A +   C  VVSC+DI+ALAARD+++L+ GP Y++P GRRD +    +   ++P    +  ++   F +K  NA++ V LS  HT+G   C
Sbjct:   77 ILVNNGAISEKNAFGHEGVR--GFEIVEAVKAELEAACPGVVSCSDIVALAARDAISLANGPAYEVPTGRRDGRVSNMSLAKDMPEVSDSIEILKAKFMQKGLNAKDLVLLSAAHTIGTTAC 196          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  232 DSHPFPRLLR--------SGM*WISVLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF-ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTIASIQTRPHTGQ 684
            DS   P+LLR        +G     +L+G  SE+ A  N  L       +D ++  +   C  VVSCADIL LA RD+V ++G P+Y +  GRRD  T  A  V+LPSP  +    L  F+ K  +  +   L G H++G  HC ++ +  +    +TG+
Sbjct:   64 DSSIAPKLLRLLYSDCMVNGCDGSILLQGPNSERTAPQNRGLG--GFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGTLNADAVDLPSPSISVDESLAYFKSKGLDVLDMTTLLGAHSMGKTHC-SYVVDRLYNFKNTGK 220          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 52/139 (37.41%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  247 PRLLR--------SGM*WISVLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF-ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHC 636
            P+LLR        SG     +LEG  SE+ A  N  L    L  +D ++  + + C  VVSCADIL LA RD+V L+G P+Y +  GRRD  T     V+LPSP  +    ++ F+ +  N  +   L G H++G  HC
Sbjct:   69 PKLLRLLYSDCFVSGCDASVLLEGPNSEKMAPQNRGLGGFVL--IDKIKIVLEQRCPGVVSCADILNLATRDAVHLAGAPSYPVFTGRRDGLTSDKQTVDLPSPSISWDQAMSYFKSRGLNVLDMATLLGSHSMGRTHC 205          
The following BLAST results are available for this feature:
BLAST of FC920815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER21_ARATH2.341e-2033.06Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER42_ARATH3.044e-2036.36Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER66_ARATH4.817e-1934.18Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=... [more]
PERA_IPOBA7.113e-1944.94Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER6_ARATH1.206e-1833.61Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER43_ARATH1.450e-1536.07Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=... [more]
PER61_ARATH1.603e-1433.75Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER26_ARATH4.665e-1437.41Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32013D05EF RVDevelop1 Citrus clementina cDNA clone C32013D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920815 ID=FC920815; Name=FC920815; organism=Citrus clementina; type=EST; length=692bp
GACAACACAAAGCGAGGTAATCCCAATGGCAACTGCTTCAGCTTCTTCTT
TCATTTCTCTTCTTTTGATATCTTCTCTTTTGCTTGCTTCTTTCACTGAG
GCACAAAAGCCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCA
GAGCTGTCCCAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCC
TGAAAAAAGATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCAC
GATTGCTTCGTTCAGGGATGTGATGGATCAGTGTTCTAGAGGGATCAACT
AGTGAGCAAAATGCACGTCCAAACCTAAGCTTAAGGAAGGAGGCTTTAAA
ATTTGTAGACGATCTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTG
TTTCTTGTGCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTG
TCTGGAGGGCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAAC
ATTCGCAACAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGA
TCCTCAACGATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCC
CTCTCCGGCGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTCACCAT
CGCCTCTATCCAAACAAGACCCCACACTGGACAAACATTCGC
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