FC920815

Overview
NameFC920815
Unique NameFC920815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10680 contig Ccv1_Contig10680:104..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.356e-28
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  304 EQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKT--FATVVN--LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            E+ A PN +  +   + +D +++RV + C  VVSCADILA+ ARDSV L GG  + + LGRRDS T  F+T  +  LP P S    ++N FR    + R+ VALSG HT+G A C  F
Sbjct:   92 EKTAGPNNNSVR-GYEVIDAIKSRVERLCPGVVSCADILAITARDSVLLMGGRGWSVKLGRRDSITASFSTANSGVLPPPTSTLDNLINLFRANGLSPRDMVALSGAHTIGQARCVTF 208          

HSP 2 Score: 58.151 bits (139), Expect = 1.356e-28
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 2
Query:  140 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            FY  SCP L   VR+ +Q  + K+  +AA L+R+ FHDCFV GCD S+
Sbjct:   34 FYSDSCPSLLPTVRRVVQREVAKERRIAASLLRLFFHDCFVNGCDASI 81          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER4_ARATH (Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.767e-28
Identity = 49/120 (40.83%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  301 SEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATVVNLPSPFSNTTVILND----FREKTFNARETVALSGGHTVGLAHCPAF 645
            SE+++  N    +   + +D  ++ V   C  VVSCADI+A+AARD+    GGP YD+ +GRRDS   F  + +   P  N    LND    F  K  N R+ VALSG HT+G A C  F
Sbjct:   82 SERDSLANFQSAR-GFEVIDQAKSAVESVCPGVVSCADIIAVAARDASEYVGGPRYDVKVGRRDSTNAFRAIADRDLP--NFRASLNDLSELFLRKGLNTRDLVALSGAHTLGQAQCLTF 198          

HSP 2 Score: 66.2402 bits (160), Expect = 1.767e-28
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            LS TFYDQ+C    S +R  I+ A+ ++  +AA LIR+HFHDCFV GCD SV
Sbjct:   21 LSPTFYDQTCQNALSTIRSSIRTAISRERRMAASLIRLHFHDCFVNGCDASV 72          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.988e-28
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  283 VLEGSTSEQNARPNLSLRKEALKF--VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHC 636
            +L+ +TS +  +  L     A  F  +D ++A V + C R VSCAD+L +AA+ SV L+GGP++ +PLGRRDS + F  +   NLP+PF     +  +F+    +   + VALSG HT G   C
Sbjct:   85 LLDNTTSFRTEKDALGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTLAGGPSWKVPLGRRDSLQAFLDLANANLPAPFFTLPQLKANFKNVGLDRPSDLVALSGAHTFGKNQC 208          

HSP 2 Score: 66.6254 bits (161), Expect = 2.988e-28
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            L+ TFYD SCP + +IVR  I N L+ D  +A  ++R+HFHDCFV GCD S+
Sbjct:   33 LTPTFYDTSCPTVTNIVRDTIVNELRSDPRIAGSILRLHFHDCFVNGCDASI 84          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.989e-28
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  283 VLEGSTSEQNARPNLSLRKEALKF--VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHC 636
            +L+ +TS    +  L     A  F  VD ++A V + C R VSCAD+L +AA+ SV L+GGP++ +PLGRRDS + F  +   NLP+PF     + + F +   +   + VALSGGHT G   C
Sbjct:   82 LLDNTTSFLTEKDALGNANSARGFPTVDRIKAAVERACPRTVSCADVLTIAAQQSVNLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDAFAKVGLDRPSDLVALSGGHTFGKNQC 205          

HSP 2 Score: 66.2402 bits (160), Expect = 2.989e-28
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            L+ TFYD SCP + +IVR  I N L+ D  + A ++R+HFHDCFV GCD S+
Sbjct:   30 LTPTFYDTSCPNVSNIVRDIIINELRSDPRITASILRLHFHDCFVNGCDASI 81          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.992e-28
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  283 VLEGSTSEQNARPNLSLRKEALKF--VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSK-TFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHC 636
            +L+ +TS +  +        A  F  VD ++A V + C R VSCAD+L +AA+ SV L+GGP++ +PLGRRDS+  F  +   NLP+P      +   F     N   + VALSGGHT G   C
Sbjct:   63 LLDNTTSFRTEKDAFGNANSARGFPVVDRIKAAVERACPRTVSCADVLTIAAQQSVNLAGGPSWRVPLGRRDSRQAFLDLANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQC 186          

HSP 2 Score: 68.9366 bits (167), Expect = 2.992e-28
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            L+ TFYD SCP + +IVR  I N L+ D  +AA ++R+HFHDCFV GCD S+
Sbjct:   11 LTPTFYDNSCPNVSNIVRDIIINELRSDPSIAASILRLHFHDCFVNGCDASI 62          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER17_ARATH (Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.896e-28
Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  343 ALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVVN---LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHC 636
            + + VDD++  + K C   VSCADI+ +AARD+VAL+GGP++++ LGR+DS T +   +   +PSP +N T +++ F     + ++ VALSG H++G   C
Sbjct:   97 SFEVVDDIKEALEKACPATVSCADIVIMAARDAVALTGGPDWEVKLGRKDSLTASQQDSDDIMPSPRANATFLIDLFERFNLSVKDMVALSGSHSIGQGRC 197          

HSP 2 Score: 58.9214 bits (141), Expect = 3.896e-28
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 2
Query:  140 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            FY ++CP+ ESIVR++++ A+ K+    A ++R  FHDCFV GCD S+
Sbjct:   27 FYSETCPEAESIVRREMKKAMIKEARSVASVMRFQFHDCFVNGCDASL 74          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.897e-28
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  289 EGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKT---FATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            +G+ +E++A  N+         VDD++  +   C  VVSCADILALA+   V L+ GP++ +  GR+DS T        ++PSPF    V++  F  K  +  + VALSG HT G A C  F
Sbjct:   80 DGTQTEKDAPANVGAG--GFDIVDDIKTALENVCPGVVSCADILALASEIGVVLAKGPSWQVLFGRKDSLTANRSGANSDIPSPFETLAVMIPQFTNKGMDLTDLVALSGAHTFGRARCGTF 199          

HSP 2 Score: 64.3142 bits (155), Expect = 3.897e-28
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            LS TFYD +CP + SIVR  +    + D    A +IR+HFHDCFV GCDGS+
Sbjct:   24 LSATFYDTTCPNVTSIVRGVMDQRQRTDARAGAKIIRLHFHDCFVNGCDGSI 75          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.063e-28
Identity = 56/117 (47.86%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  298 TSEQNARPNLSLRKEALKFVDDLRARVHKECGRV-VSCADILALAARDSVALSGGPNYDLPLGRRDSKT--FATVVN-LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHC 636
            T EQN+ PN +  +   + +   +  V   C  V VSCADILA+AARDSVA  GG  Y + LGR D++T  F+  +N LP+PF N TV +  F +K F  RE VAL+G HTVG A C
Sbjct:  131 TGEQNSPPNANSAR-GYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARC 246          

HSP 2 Score: 48.521 bits (114), Expect = 5.063e-28
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 2
Query:  170 SIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            S VR  + +A+  +  + A LIR+HFHDCFV GCDG +
Sbjct:   84 SAVRAVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGI 121          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.064e-28
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  301 SEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKT---FATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            SE+NA  N +  +     VD ++  +   C  +VSC+DILALA+  SV+L+GGP++ + LGRRD  T        +LPSPF     I + F        + V+LSG HT G   C  F
Sbjct:   94 SEKNAPANANSTR-GFNVVDSIKTALENACPGIVSCSDILALASEASVSLAGGPSWTVLLGRRDGLTANLSGANSSLPSPFEGLNNITSKFVAVGLKTTDVVSLSGAHTFGRGQCVTF 210          

HSP 2 Score: 67.781 bits (164), Expect = 5.064e-28
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            L+ TFY  +CP   +IVR  IQ AL+ D  +   LIR+HFHDCFV GCDGS+
Sbjct:   33 LNATFYSGTCPNASAIVRSTIQQALQSDARIGGSLIRLHFHDCFVNGCDGSL 84          
BLAST of FC920815 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.074e-28
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  283 VLEGST---SEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS----KTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 645
            +LEG++   SE++A PN    +   + +D  ++ V K C  +VSCADI+A+AARD+    GGP + + +GRRDS    K  A    LP        +   F +K  N R+ VALSG HT+G + C  F
Sbjct:   78 LLEGTSTIESERDALPNFKSVR-GFEVIDKAKSEVEKVCPGIVSCADIIAVAARDASEYVGGPKWAVKVGRRDSTAAFKALANSGELPGFKDTLDQLSGLFSKKGLNTRDLVALSGAHTIGQSQCFLF 204          

HSP 2 Score: 64.6994 bits (156), Expect = 5.074e-28
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  128 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSV 283
            LS TFYDQSC    S +R  ++ A+ ++  +AA LIR+HFHDCFV GCD S+
Sbjct:   26 LSPTFYDQSCRNALSKIRSSVRTAIARERRMAASLIRMHFHDCFVHGCDASI 77          
The following BLAST results are available for this feature:
BLAST of FC920815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER68_ARATH1.356e-2844.92Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PER4_ARATH1.767e-2840.83Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 ... [more]
PER33_ARATH2.988e-2838.71Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER1B_ARMRU2.989e-2840.32Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER1C_ARMRU2.992e-2839.52Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER17_ARATH3.896e-2840.59Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=... [more]
PERX_TOBAC3.897e-2837.70Lignin-forming anionic peroxidase OS=Nicotiana tab... [more]
PER1_SOLLC5.063e-2847.86Suberization-associated anionic peroxidase 1 OS=So... [more]
PER54_ARATH5.064e-2838.14Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER5_ARATH5.074e-2838.28Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32013D05EF RVDevelop1 Citrus clementina cDNA clone C32013D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920815 ID=FC920815; Name=FC920815; organism=Citrus clementina; type=EST; length=692bp
GACAACACAAAGCGAGGTAATCCCAATGGCAACTGCTTCAGCTTCTTCTT
TCATTTCTCTTCTTTTGATATCTTCTCTTTTGCTTGCTTCTTTCACTGAG
GCACAAAAGCCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCA
GAGCTGTCCCAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCC
TGAAAAAAGATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCAC
GATTGCTTCGTTCAGGGATGTGATGGATCAGTGTTCTAGAGGGATCAACT
AGTGAGCAAAATGCACGTCCAAACCTAAGCTTAAGGAAGGAGGCTTTAAA
ATTTGTAGACGATCTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTG
TTTCTTGTGCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTG
TCTGGAGGGCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAAC
ATTCGCAACAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGA
TCCTCAACGATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCC
CTCTCCGGCGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTCACCAT
CGCCTCTATCCAAACAAGACCCCACACTGGACAAACATTCGC
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