FC920818

Overview
NameFC920818
Unique NameFC920818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.070e-77
Identity = 144/216 (66.67%), Postives = 166/216 (76.85%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTA-LRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            AT A+  S+FAG+   +  S+E  R       G++TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIH RW MLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP+ FAEL+V+
Sbjct:    4 ATMALSSSSFAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVK 213          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.237e-77
Identity = 149/221 (67.42%), Postives = 169/221 (76.47%), Query Frame = 3
Query:   63 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDPD FA++KV+
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVK 225          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.839e-77
Identity = 146/216 (67.59%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +T A+  +AFAG+     S+ F          R+TMR+T  K+ P     S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ F ELKV+
Sbjct:    4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVK 212          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.932e-77
Identity = 141/215 (65.58%), Postives = 165/215 (76.74%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            ++ A+      G+     +N   +++G   G R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+ FAELKV+
Sbjct:    4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 215          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.167e-76
Identity = 142/212 (66.98%), Postives = 167/212 (78.77%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +T A+   A AG+ A++ +       G    GR++MR+TVK+    S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+LMG VEGYR+                +FDPLGLA+DP++ AELKV+
Sbjct:    4 STMALSSPALAGK-AVKVAPSSSELFG---NGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVK 211          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.167e-76
Identity = 142/217 (65.44%), Postives = 163/217 (75.12%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVRSS 704
            AT A+  S FAG+      +       +   G+ TMR+T  K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVW KAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+                +FDPLGLA+DP+ FAELKV+ +
Sbjct:    4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKET 216          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.167e-76
Identity = 144/214 (67.29%), Postives = 163/214 (76.17%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSTPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            AT A+  S FAG+    L  S+E      V    R++MR+T  +    S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADD + FAELKV+
Sbjct:    4 ATMALSSSTFAGKAVKNLSSSSE------VQGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVK 211          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.524e-76
Identity = 144/216 (66.67%), Postives = 164/216 (75.93%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +T A+  +AFAG+     S+ F          R+TMR+T  K+ P     S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+                 FDPLGLADDP+ FA++KV+
Sbjct:    4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVK 212          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.599e-76
Identity = 145/221 (65.61%), Postives = 161/221 (72.85%), Query Frame = 3
Query:   63 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            MA+  I   AFAG           + +GV  G     R+TMR+        S   S WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:    1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVK 221          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.562e-76
Identity = 144/219 (65.75%), Postives = 166/219 (75.80%), Query Frame = 3
Query:   63 MATSAIQQSAFAGQTALRQS---NEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            MA S+    A +  T   +    N   +++G A   R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+ FAELKV+
Sbjct:    1 MAASSSSSMALSSPTLAGKQLKLNPSSQELGAA---RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 216          
The following BLAST results are available for this feature:
BLAST of FC920818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_PETSP3.070e-7766.67Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_PYRPY5.237e-7767.42Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_MAIZE6.839e-7767.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB28_PEA8.932e-7765.58Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_APIGR1.167e-7666.98Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP1.167e-7665.44Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_HORVU1.167e-7667.29Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_MAIZE1.524e-7666.67Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2B_PINSY2.599e-7665.61Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PEA7.562e-7665.75Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC32013D08EF RVDevelop1 Citrus clementina cDNA clone C32013D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920818 ID=FC920818; Name=FC920818; organism=Citrus clementina; type=EST; length=705bp
CGGAAATCAGAGTGCGAAAAGATCCTTCAGCAACAAAAGGAAAAGCTTTC
GCATAAGAACATATGGCGACCTCTGCTATCCAACAATCAGCATTTGCTGG
CCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTG
CTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAG
AGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGA
GCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGG
ATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAG
CTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGT
CTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTT
GGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTT
GGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTG
CCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTC
CTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCA
CTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAAGTCAGGAG
CTCAA
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