FC920818

Overview
NameFC920818
Unique NameFC920818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 55/148 (37.16%), Postives = 71/148 (47.97%), Query Frame = 3
Query:  258 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKV+
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVK 191          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 587
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 3
Query:  216 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 587
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 59/181 (32.60%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  159 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK++
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLK 190          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 63          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212          
BLAST of FC920818 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  489 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 698
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKV+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVK 71          
The following BLAST results are available for this feature:
BLAST of FC920818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB11_SOLLC3.341e-1537.16Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC4.364e-1530.39Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.699e-1537.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU1.270e-1432.60Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2F_SOLLC2.166e-1461.90Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.166e-1461.90Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.166e-1461.90Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.166e-1461.90Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.166e-1461.90Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA6.302e-1456.34Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013D08EF RVDevelop1 Citrus clementina cDNA clone C32013D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920818 ID=FC920818; Name=FC920818; organism=Citrus clementina; type=EST; length=705bp
CGGAAATCAGAGTGCGAAAAGATCCTTCAGCAACAAAAGGAAAAGCTTTC
GCATAAGAACATATGGCGACCTCTGCTATCCAACAATCAGCATTTGCTGG
CCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTG
CTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAG
AGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGA
GCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGG
ATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAG
CTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGT
CTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTT
GGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTT
GGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTG
CCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTC
CTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCA
CTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAAGTCAGGAG
CTCAA
back to top