FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCAR-NEWG--VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV-GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 630
            E G +DV IK+    IC +D+H    +EW       P+V GHE VG V  VG+ V++++ G +V G G +V  C  C +C+ G  + C N +         G    G +++ I + QH V+  PD++P +  A     G  V++ + +
Sbjct:   26 EIGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSAVTEYRIGQRVSGEGHIV--CGHCRNCRAGRGHLCRNTLGV-------GVHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVHTALSF 164          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: TDH_ANASK (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 43/132 (32.58%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCAR-NEWGVTNYPI--VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA 585
            E G  DV IK+    IC +D+H    +EW     P+  V GHE VG V KVG  V  F+ G++V  G    +C  C +C+ G  + C + +         G    G +++ +V+    V R PD++P D  A
Sbjct:   23 EVGVHDVMIKVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVS-GEGHVTCGFCRNCRAGRRHLCRHTVGV-------GVNRPGSFAEYVVIPADNVYRIPDDIPDDIAA 146          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 47/149 (31.54%), Postives = 69/149 (46.31%), Query Frame = 1
Query:  211 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-------PNMILTYNS--IDRDGTKTY-----GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 615
            D+V I++   G+C SD H    +  +  +P++ GHE  G VT+VG  V  F  GD V V   + SC KC SCQ G+ N C           +T  S  I   G   Y     G +S  +VV +  V++   ++P +    + C   T Y
Sbjct:   28 DEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHV-VLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGY 175          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 47/149 (31.54%), Postives = 69/149 (46.31%), Query Frame = 1
Query:  211 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-------PNMILTYNS--IDRDGTKTY-----GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 615
            D+V I++   G+C SD H    +  +  +P++ GHE  G VT+VG  V  F  GD V V   + SC KC SCQ G+ N C           +T  S  I   G   Y     G +S  +VV +  V++   ++P +    + C   T Y
Sbjct:   28 DEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHV-VLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGY 175          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 45/151 (29.80%), Postives = 72/151 (47.68%), Query Frame = 1
Query:  208 ADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYG--------------------GYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 597
            A +V IKIL   +CH+DL   +  +G ++ +P + GHE VG V  +G NV  FK+GD V + V    C++C+ C+    N+C      + S     T+ YG                     +S+  VVD  ++++    +P+D  A L C
Sbjct:   40 AYEVRIKILCTSLCHTDLTFWKLSFGPISRFPRILGHEAVGVVESIGENVDGFKQGDVV-LPVFHPYCEECKDCKSSKTNWCDRYAEDFIS----NTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSC 185          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 44/158 (27.85%), Postives = 71/158 (44.94%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY-------------GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            +V IKIL  GIC +D H  +    V+ +P++ GHE  G V  +G  V+  K GDKV + + +  C++C +C+    N C    +T   +  DGT  +               +++  VVD+  V +  D  P +    + C   T Y      G  +P
Sbjct:   36 EVRIKILATGICRTDDHVIKGTM-VSKFPVIVGHEATGIVESIGEGVTTVKPGDKV-IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKP 191          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: YDJJ_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjJ OS=Escherichia coli (strain K12) GN=ydjJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 46/148 (31.08%), Postives = 69/148 (46.62%), Query Frame = 1
Query:  211 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVP----------GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPM 624
            D+V IK+ + GIC SD+H      G  + P +P          GHE  GTV  VG+ V KFK GD+V +   V  C  C  C +G  N CP++       +  G  T+      +   + +  + PDNM    GA +  A + +++ M
Sbjct:   27 DEVLIKVEYVGICGSDVH------GFESGPFIPPKDPNQEIGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGV-PCGHCRYCLEGKYNICPDVDFMATQPNYRGALTH-----YLCHPESFTYKLPDNMDTMEGALVEPAAVGMHAAM 162          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: TDH_ANAD2 (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCAR-NEWGVTNYPI--VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA 585
            E G  DV I++    IC +D+H    +EW     P+  V GHE VG V KVG  V  F+ G++V  G    +C  C +C+ G  + C + +         G    G +++ +V+    V R PD++P D  A
Sbjct:   23 EVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVS-GEGHVTCGFCRNCRAGRRHLCRHTVGV-------GVNRPGSFAEYVVIPADNVYRIPDDIPDDIAA 146          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 47/166 (28.31%), Postives = 73/166 (43.98%), Query Frame = 1
Query:  166 GTFSPFHFSRRETG---ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY-------------GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 615
            GT  PF     E     A +V +KIL  GIC +D H  +    V+ +P++ GHE VG V  VG  V+  + GDKV + + +  C++C  C+    N C    LT   +  DGT  +               +++  V+D+  V +     P +    + C   T Y
Sbjct:   17 GTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGTM-VSKFPVIVGHEAVGIVESVGEEVTTVRPGDKV-IPLFLPQCRECNPCRNPEGNLCIRSDLTGRGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGY 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 47/150 (31.33%), Postives = 68/150 (45.33%), Query Frame = 1
Query:  208 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMIL-TYNSIDRDGTKTY-------------GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 615
            A +V IKIL  GIC SD H       V N+PI+ GHE  G V  VG  V+  K GDKV + + +  C +C SC+    N C    L  +  +  DGT  +             G +++  V  +  V++   + PL+    + C   T Y
Sbjct:   33 AHEVRIKILASGICRSDDHVLSGALKV-NFPIILGHEAAGVVESVGEGVTSMKPGDKV-IPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGY 180          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
TDH_MESSB7.512e-1231.08L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]
TDH_ANASK9.811e-1232.58L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
ADHB_MYCTU9.811e-1231.54Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO9.811e-1231.54Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
ADHL1_ARATH1.281e-1129.80Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADH7_HUMAN1.281e-1127.85Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
YDJJ_ECOLI2.186e-1131.08Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_ANAD22.186e-1131.82L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
ADH7_RAT2.186e-1128.31Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH1B_UROHA2.186e-1131.33Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]

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Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
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