FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920823_ssr85 microsatellite FC920823_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 99/158 (62.66%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  175 SPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            SPF FSRR TG +DV  K+L+CG+CHSDLH  +NEWG+T YPIVPGHEIVG VT+VG+ V KFK GD VGVG LV SC  CE+C    EN C   + TY   + DG+ TYGGY+D +V DQH+VLR+P+N+PLD+GAPLLCAGIT YSP++Y+G+ +P
Sbjct:    3 SPFKFSRRATGDNDVRFKVLYCGVCHSDLHMVKNEWGMTTYPIVPGHEIVGRVTEVGSKVEKFKVGDAVGVGCLVGSCLSCENCDDDSENNCAKQVQTYAFTNVDGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKP 160          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.309e-58
Identity = 101/183 (55.19%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  103 AKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD-AGAPLLCAGITVYSPMKYYGMTEP 648
            A   E E P+KA GWAARD++G  SPF+FSRR+ G +DV +++L+CGICH+DLH A+N++G + YP VPGHE++G V +VG+ V K+K GDKVGVG  V SC+ C++C   LENYCP  ILT      DGT TYGGYSD +VVD+H+V R P+ +PLD  G+  LC G + +SP+KYYG+ +P
Sbjct:    3 ASQVEFEHPRKAFGWAARDSSGLLSPFNFSRRDIGEEDVALEVLYCGICHTDLHMAKNDFGNSIYPYVPGHEVIGIVAEVGSKVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTTTYGGYSDSMVVDEHFVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKP 184          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.001e-56
Identity = 93/176 (52.84%), Postives = 131/176 (74.43%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            E  +   G+AARD++G  SP+ ++ R  G +DV +++++CGICHSDL    NE G++NYP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C   +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TVYSPMK++GMTEP
Sbjct:    5 ESERTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.001e-56
Identity = 93/176 (52.84%), Postives = 131/176 (74.43%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            E  +   G+AARD++G  SP+ ++ R  G +DV +++++CGICHSDL    NE G++NYP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C   +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TVYSPMK++GMTEP
Sbjct:    5 ESEKTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.708e-56
Identity = 93/176 (52.84%), Postives = 133/176 (75.57%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            E  +   G+AARD++G  SP+ ++ R+ G +DV +K+++CGICHSDL   RNE G+++YP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C Q +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TV+SPMK++ MTEP
Sbjct:    5 ESEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.231e-56
Identity = 93/176 (52.84%), Postives = 133/176 (75.57%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            E  +   G+AARD++G  SP+ ++ R+ G +DV +K+++CGICHSDL   RNE G+++YP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C Q +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TV+SPMK++ MTEP
Sbjct:    5 ETEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.937e-53
Identity = 88/170 (51.76%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  130 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 639
            +KA+GWAARD +G  SP+ ++ R TGADDV IK++ CGICH+D+H  +N+ G++NYP+VPGHE+VG V +VG++VSKF  GD VGVGV+V  C  C+ C   LE YC   I +YN +  DG  T GG++D ++V+Q +V++ P+ M ++  APLLCAG+TVYSP+ ++G+
Sbjct:    9 KKALGWAARDPSGVLSPYSYTLRSTGADDVYIKVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGL 178          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.496e-52
Identity = 89/172 (51.74%), Postives = 126/172 (73.26%), Query Frame = 1
Query:  130 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            + AIGWAARD +G  SP+ ++ R TG +DV +K+L+CG+CHSDLH  +N+ G++NYP+VPGHE+VG V +VG +VSKFK GD VGVG+LV SC+ C  C++ +E YC   I   N +  DG  T GG+++ +VVDQ++V++ P+ M  +  APLLCAGITVYSP  ++G  +
Sbjct:    8 KSAIGWAARDPSGLLSPYTYTLRNTGPEDVQVKVLYCGLCHSDLHQVKNDLGMSNYPLVPGHEVVGKVVEVGADVSKFKVGDTVGVGLLVGSCRNCGPCKREIEQYCNKKIWNCNDVYTDGKPTQGGFANSMVVDQNFVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQ 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.954e-52
Identity = 86/175 (49.14%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E  +K +GWAA D+TG  +P+ +S R+TG +DV IK++ CG+CH+D+H  +N+ G+++YP+VPGHE+VG V +VG++V++FK GD VGVGV+V SC+ C  C+  +E YC   I +YN +  DG  T GG+++ +VV Q +V+R PD M  +  APLLCAG+TVYSP+K++G+ +
Sbjct:    5 ETERKIVGWAATDSTGHLAPYTYSLRDTGPEDVFIKVISCGVCHTDIHQIKNDLGMSHYPMVPGHEVVGEVVEVGSDVTRFKVGDVVGVGVIVGSCKNCHPCKSEIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVHQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQ 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.552e-52
Identity = 86/173 (49.71%), Postives = 124/173 (71.68%), Query Frame = 1
Query:  130 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            +K +GWAARD TG  SP+ ++ R TG +DV +K+L+CGICH+D+H A+N  G + YP+VPGHE+VG V +VG  V+K+  GD VGVGV+V  C++C  C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K++G+T P
Sbjct:    8 RKVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVAKYGVGDVVGVGVIVGCCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNP 180          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MTDH_PETCR1.397e-5862.66Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
MTDH3_STYHU5.309e-5855.19Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH7_PICAB1.001e-5652.84Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH2_PICAB1.001e-5652.84Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH_PINTA1.708e-5652.84Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA2.231e-5652.84Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH4_ARATH3.937e-5351.76Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH2_TOBAC1.496e-5251.74Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH_POPDE1.954e-5249.14Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH_MAIZE2.552e-5249.71Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
back to top