FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920823_ssr85 microsatellite FC920823_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.552e-52
Identity = 92/182 (50.55%), Postives = 123/182 (67.58%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN------MPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            +QP+   GWAARD  G  SPF +  R  G +DV +KILFCGICHSDL   +NEWG   YP+VPGHEIVG V +VG++V++F  GD VGVG + ++C+ C +C+ G ENYC  ++ ++N+   DG   +GG+S+L VV+Q YV+R P         PLD  APLLCAG+TVY PM+  G+  P
Sbjct:    3 QQPKMVTGWAARDANGLLSPFSYPLRAKGDEDVVVKILFCGICHSDLSTIKNEWGNAKYPVVPGHEIVGVVAEVGSSVARFAAGDTVGVGYIASTCRACANCRDGFENYCAGLVPSFNAALPDGATVHGGFSELAVVNQRYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRP 184          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.333e-52
Identity = 89/176 (50.57%), Postives = 126/176 (71.59%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            E  +K  GWAARD +G  SP+ ++ RETG +DV I+I+ CGICH+DLH  +N+ G++NYP+VPGHE+VG V +VG++VSKF  GD VGVG LV  C  C  C++ LE YCP  I +YN +  +G  T GG++   VV Q +V++ P+ M ++  APLLCAG+TVYSP+ ++G+ +P
Sbjct:    5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.353e-52
Identity = 89/175 (50.86%), Postives = 125/175 (71.43%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E  +K  GWAARD +G  SP+ ++ RETG +DV IKI++CGICH+D+H  +N+ G +NYP+VPGHE+VG V +VG++V+KFK GD VG G +V  C+ C  C+  +E YC   I +YN +  DG  T GG+S  +VVDQ +V++ PD M  +  APLLCAG+TVYSP+ ++G+ E
Sbjct:    5 EAERKTTGWAARDPSGVLSPYTYTLRETGPEDVFIKIIYCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEVGSDVTKFKVGDCVGDGTIVGCCKTCRPCKADVEQYCNKKIWSYNDVYTDGKPTQGGFSGHMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKE 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.698e-52
Identity = 88/175 (50.29%), Postives = 125/175 (71.43%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E  +  IGWAARD +G  SP+ ++ R TG +DV +K+L+CG+CH+DLH  +N+ G++NYP+VPGHE+VG V +VG +VSKFK GD VGVG+LV SC+ C  C++ +E YC   I   N +  DG  T GG++  +VVDQ +V++ P+ M  +  APLLCAGITVYSP+ ++G  +
Sbjct:    5 EVEKTTIGWAARDPSGVLSPYTYTLRNTGPEDVEVKVLYCGLCHTDLHQVKNDLGMSNYPLVPGHEVVGEVVEVGPDVSKFKVGDTVGVGLLVGSCRNCGPCKRDIEQYCNKKIWNCNDVYTDGKPTQGGFAKSMVVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQ 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.654e-51
Identity = 85/173 (49.13%), Postives = 124/173 (71.68%), Query Frame = 1
Query:  130 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            +K +GWAARD TG  +P+ ++ R TG +DV +K+L+CGICH+D+H A+N  G + YP+VPGHE+VG V +VG  V+K+  GD VGVGV+V  C++C+ C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K +G+T P
Sbjct:    8 RKVVGWAARDATGHLAPYTYTLRSTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYGVGDVVGVGVIVGCCRECKPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVMKIPAGLAPEQAAPLLCAGVTVYSPLKAFGLTTP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 84/175 (48.00%), Postives = 123/175 (70.29%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E  +K +GWAARD +G  SP+ ++ R TG  DV ++++ CGICH+D+H  +N+ G++NYP+VPGHE+VG V +VG+ V+KF+ GD VGVG +V SC  C  C   +E YC   I +YN +  DG  T GG++  +VVDQ +V++ PD M  +  APLLCAG+TVYSP+ ++G+ +
Sbjct:    5 EVERKTVGWAARDPSGVLSPYEYTLRNTGPQDVYVEVMCCGICHTDVHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVTKFRAGDVVGVGCIVGSCGNCRPCNSDIEQYCNKKIWSYNDVYPDGKPTQGGFAGAMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLNHFGLKQ 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 86/169 (50.89%), Postives = 119/169 (70.41%), Query Frame = 1
Query:  142 GWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            GWAARD TG  SP+ ++ R TGA+DV +K+L+CGICH+DLH  +N  G + YP+VPGHE+VG V +VG  VSK+  GD VGVGV+V  C+ C  C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K++G+  P
Sbjct:   13 GWAARDATGHLSPYTYNLRRTGAEDVVLKVLYCGICHTDLHQTKNHLGASKYPMVPGHEVVGEVVEVGPEVSKYSVGDVVGVGVIVGCCRDCRPCKANVEQYCNKKIWSYNDVYTDGKPTQGGFAGSMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLMTP 181          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 91/164 (55.49%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  145 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYY 633
            +AA   T   +    +RR+ G  DV I I F GICHSD+H  + EWG  NYP+VPGHEI G VT VG+ V+K+++GD+VGVG  V SC++C SC +G+E YC P    TYNSI +DG  T GGYS+ IVVD++YVLR PD +PLD  APLLCAGIT+YSP++++
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHW 170          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 91/164 (55.49%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  145 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYY 633
            +AA   T   +    +RR+ G  DV I I F GICHSD+H  + EWG  NYP+VPGHEI G VT VG+ V+K+++GD+VGVG  V SC++C SC +G+E YC P    TYNSI +DG  T GGYS+ IVVD++YVLR PD +PLD  APLLCAGIT+YSP++++
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHW 170          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50
Identity = 82/169 (48.52%), Postives = 122/169 (72.19%), Query Frame = 1
Query:  142 GWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            GWAARD +G  +P++++ R+TG +DV +K+L+CGICH+D+H A+N  G + YP+VPGHE+VG V +VG  V+K+  GD VGVGV+V  C++C  C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K++G+  P
Sbjct:   12 GWAARDASGHLTPYNYTLRKTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYSAGDVVGVGVIVGCCRECHPCKANVEQYCNKRIWSYNDVYTDGRPTQGGFASAMVVDQKFVVKIPAGLAPEQAAPLLCAGLTVYSPLKHFGLMSP 180          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
CADH9_ORYSJ2.552e-5250.55Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH5_ARATH3.333e-5250.57Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH1_ARACO4.353e-5250.86Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH1_TOBAC9.698e-5250.29Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH_SACOF1.654e-5149.13Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH1_OCIBA4.813e-5148.00Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH_LOLPR1.072e-5050.89Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
ADHC_MYCTU1.072e-5055.49NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO1.072e-5055.49NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH2_ORYSJ2.389e-5048.52Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
back to top