FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920823_ssr85 microsatellite FC920823_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.321e-50
Identity = 90/168 (53.57%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  145 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            WAARD +G  SP+ F+RRE  ++DV+++I  CG+C++D+   RN +  + YP+VPGHEI G VT+VG +V  FK GD VGVGV V SCQ CE+C   LEN+C   ++TYNS+D DGT T GGYS  I+V Q Y  + P + PL   APLLCAGITVY+PM  + M +P
Sbjct:   13 WAARDPSGILSPYKFNRREVQSEDVSLRITHCGVCYADVIWTRNMFNDSIYPLVPGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGTVTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.077e-50
Identity = 89/168 (52.98%), Postives = 114/168 (67.86%), Query Frame = 1
Query:  145 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            WAARD +G  SP+ F+RR   +DDV+++I  CG+C++D+   RN    + YP+VPGHEI G VT+VG +V  FK GD VGVG  V SC+ CE+C   LENYC   + T+N +D DGT T GGYS  IVV + Y  + PD  PL+  APLLCAGITVYSPM  + M +P
Sbjct:   13 WAARDPSGILSPYKFNRRAVQSDDVSLRITHCGVCYADVAWTRNILNNSMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQP 180          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.712e-48
Identity = 82/170 (48.24%), Postives = 123/170 (72.35%), Query Frame = 1
Query:  139 IGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            +G AA+D +G  +P+ ++ R TG DDV IKI +CG+CHSDLH  +N+ G++NYP+VPGHE+VG V +VG+NV++FK G+ VGVG+LV  C+ C +C   +E YC   I +YN +  DG  T GG+++  VV+Q +V++ P+ +  +  APLLCAG+TVYSP+ ++G+  P
Sbjct:   12 VGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTP 181          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 80/175 (45.71%), Postives = 120/175 (68.57%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV + +V++ PD +  +  APL+CAG+TVYSP+  +G+ +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQ 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48
Identity = 79/175 (45.14%), Postives = 120/175 (68.57%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CG+CHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV + +V++ PD +  +  APL+CAG+TVYSP+  +G+ +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGVCHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQ 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 87/168 (51.79%), Postives = 114/168 (67.86%), Query Frame = 1
Query:  145 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            WAARD +G  SP   +RR    DDV++ I  CG+C++D+  +RN+ G + YP+VPGHEI G VTKVG NV +FK GD VGVG  V SC++CE C +G E  C   + T+N ID DG+ T GGYS  IVV + Y  + P + PL++ APLLCAGITVY+PM  + M +P
Sbjct:   14 WAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDSKYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQP 181          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.472e-47
Identity = 79/175 (45.14%), Postives = 119/175 (68.00%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV + +V++ PD +  +  APL+CAG+TVY P+  +G+ +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYRPLVRFGLKQ 179          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 79/175 (45.14%), Postives = 119/175 (68.00%), Query Frame = 1
Query:  121 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 645
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV Q +V++ PD +  +  A ++CAG+TVYSP+  +G+ +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCGPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGQRFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQ 178          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.084e-42
Identity = 90/169 (53.25%), Postives = 108/169 (63.91%), Query Frame = 1
Query:  133 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRF-PDNMPLDAGAPLLCAGITVYSPMKYY 633
            KA+G  A        P   +RRE G +DV I+I +CG+CHSDLH  R+EW  T YP VPGHEIVG V  VG+ V K+  GD VGVG +V SC+ CE C+ GLENYC +M  TYNS   D    T GGYS  IVV + YVLR       L A APLLCAGIT YSP++++
Sbjct:    4 KAVG--AYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW 170          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 80/157 (50.96%), Postives = 100/157 (63.69%), Query Frame = 1
Query:  172 FSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 639
            F      RR     DV I I F GICHSD+H A +EWG   +P+VPGHEI G VT VG  V+K   GD+VGVG  V SC +CE C    E +C   ++ TYNS+D DG  TYGGYS  IVV   +V+R PD + +D  +PLLCAGIT YSP+K++ +
Sbjct:   19 FEQTTIERRGLRPHDVLIDIKFSGICHSDIHSAFDEWGGGIFPMVPGHEIAGVVTAVGTKVTKLAVGDRVGVGCFVDSCGECEYCLNAEEQFCTKGVVQTYNSVDYDGNPTYGGYSQKIVVTDRFVVRIPDRLEMDVASPLLCAGITTYSPLKHWNV 175          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
CADH4_ORYSJ5.321e-5053.57Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH1_ORYSJ9.077e-5052.98Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH_MEDSA1.712e-4848.24Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH_EUCGL6.505e-4845.71Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_EUCGU8.496e-4845.14Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH1_ARATH1.893e-4751.79Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH1_EUCGU2.472e-4745.14Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH_EUCBO2.314e-4545.14Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
YAHK_ECOLI4.084e-4253.25Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADHA_BACSU5.897e-4150.96Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
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