FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920823_ssr85 microsatellite FC920823_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH6_YEAST (NADP-dependent alcohol dehydrogenase 6 OS=Saccharomyces cerevisiae GN=ADH6 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.246e-32
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVG-NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPM 624
            D+ IKI  CG+C SD+HCA   WG    P+V GHEIVG V K+G  + S  K G +VGVG  V SC +C+ C+   E YC   + TY+    DG  + GGY++ + V +H+V+  P+N+P    APLLC G+TVYSP+
Sbjct:   35 DIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPL 172          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 68/182 (37.36%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  106 KSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT-YNSIDR-------DGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            KSP+      A+G+   D         F R++   ++V+I+I + GICHSD H    EW   ++P++PGHE++G V  +G NV K+  GD V V  ++ SC  C+ C   +E +C N     YN   R        G  TYGGYS+++++ QH+V +FP N+ ++  APL+CAG T YSP++
Sbjct:   64 KSPDK---MTALGFGVTDVGKPVELLVFDRKKPTNNEVSIEIYYTGICHSDWHFIVGEWKA-DFPLIPGHELIGRVIDIGPNVDKYSIGDIVCVSPVIDSCGHCKMCTHHIEQHCMNGATEIYNQKTRLPGDIKPSGPITYGGYSNIVIIKQHFVYKFPKNLDIERCAPLMCAGATTYSPLR 241          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH7_YEAST (NADP-dependent alcohol dehydrogenase 7 OS=Saccharomyces cerevisiae GN=ADH7 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 60/148 (40.54%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  187 FSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV-SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPN-MILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPM 624
            F  +  G  DV ++I  CGIC SD H A   WG      + GHEI+G V KVG+   +  K GD+VGVG    +C +CE C+   E YC N  +LT  +  +DG  + GG++  + + +H+ ++ P+N+P    APLLC GITV+SP+
Sbjct:   26 FDPKPFGDHDVDVEIEACGICGSDFHIAVGNWGPVPENQILGHEIIGRVVKVGSKCHTGVKIGDRVGVGAQALACFECERCKSDNEQYCTNDHVLTMWTPYKDGYISQGGFASHVRLHEHFAIQIPENIPSPLAAPLLCGGITVFSPL 173          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 636
            +V +KI  CG+CH+DLH A  +W +    P++PGHE VG V +V   V   K GD+VG+  L ++C +CE C  G E  CP+ +    S+D       GGY++       YV + PDN+     AP+LCAG+T Y  +K  G
Sbjct:   27 EVLVKIEACGVCHTDLHAAHGDWPIKPKLPLIPGHEGVGIVVEVAKGVKSIKVGDRVGIPWLYSACGECEYCLTGQETLCPHQLNGGYSVD-------GGYAEYCKAPADYVAKIPDNLDPVEVAPILCAGVTTYKALKVSG 161          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 54/142 (38.03%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 636
            +V ++I  CG+CH+DLH A  +W V    P++PGHE VG V +VG  V+  K GD+VG+  L ++C  C+ C  G E  C +      S+D       GGY++       YV++ PDN+  +  AP+ CAG+T Y  +K  G
Sbjct:   27 EVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG 161          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 636
            +V ++I  CG+CH+DLH A  +W V    P++PGHE VG + +VG  V+  K GD+VG+  L ++C  C+ C  G E  C        S+D       GGY++       YV++ PDN+  +  AP+ CAG+T Y  +K  G
Sbjct:   27 EVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCERQQNAGYSVD-------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG 161          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: YJGB_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjgB OS=Escherichia coli (strain K12) GN=yjgB PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24
Identity = 53/168 (31.55%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  145 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK--FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT 642
            +AA++  G    + +   E    DV +++ +CGICHSDL    NEWG + YP+V GHE++G V  +G+       + G +VG+G    SC  C++C  G +  C    +             GG+++ +  D  +V+  P+N+ +++  PLLC GITV+ P+  + +T
Sbjct:    7 YAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAV-------PTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHIT 167          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH1_ASPFN (Alcohol dehydrogenase 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=adh1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 55/146 (37.67%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  205 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 639
            G D++ +K+ + G+CH+DLH  + +W +    P+V GHE  G V   G+ V++F+ GD  G+  L  SC  CE C+Q  E  CPN  L+  ++D       G +    +    +  + P N+PLDA AP+LCAGITVY  +K  G+
Sbjct:   30 GPDEILVKVRYSGVCHTDLHALKGDWPLPVKMPLVGGHEGAGVVVARGDLVTEFEIGDHAGLKWLNGSCLACEFCKQADEPLCPNASLSGYTVD-------GTFQQYAIGKATHASKLPKNVPLDAVAPVLCAGITVYKGLKESGV 168          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            E G D+V + I + G+CH+DLH  + +W +    P++ GHE  G V KVG  V++ K GD+VGV  + +SC  CE C +  E  CP++ L+  ++D       G +    + +  +    P+++PL+  AP++CAGIT Y  +K
Sbjct:   30 EPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQLSGYTVD-------GTFQHYCIANATHATIIPESVPLEVAAPIMCAGITCYRALK 166          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH3_EMENI (Alcohol dehydrogenase 3 OS=Emericella nidulans GN=alcC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.545e-23
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  205 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSK--FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 636
            G D++ +K+ + G+CH+DLH  + +W + +  P++ GHE  G V   G  V    FK GD+ G+  L  SC  CE C Q  E  CP+  L+  ++D       G +    +       + PDN+PLDA AP+LCAGITVY  +K  G
Sbjct:   30 GPDEILVKMRYSGVCHTDLHAMKGDWPLPSKMPLIGGHEGAGVVVAKGELVKDEDFKIGDRAGIKWLNGSCLSCEMCMQADEPLCPHASLSGYTVD-------GTFQQYTIGKAALASKIPDNVPLDAAAPILCAGITVYKGLKESG 169          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADH6_YEAST2.246e-3246.38NADP-dependent alcohol dehydrogenase 6 OS=Saccharo... [more]
YL498_MIMIV7.226e-3137.36Probable zinc-type alcohol dehydrogenase-like prot... [more]
ADH7_YEAST1.842e-2640.54NADP-dependent alcohol dehydrogenase 7 OS=Saccharo... [more]
ADH2_BACST1.194e-2539.44Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH3_BACST5.925e-2538.03Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH1_BACST7.738e-2537.32Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
YJGB_ECOLI2.251e-2431.55Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADH1_ASPFN1.117e-2337.67Alcohol dehydrogenase 1 OS=Aspergillus flavus (str... [more]
ADH_SCHPO1.459e-2335.42Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]
ADH3_EMENI5.545e-2337.41Alcohol dehydrogenase 3 OS=Emericella nidulans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
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