FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920823_ssr85 microsatellite FC920823_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 57/144 (39.58%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            + G   V IK    G+CH+DLH A+ +W V  N P +PGHE VG V K+G  V++ KEGD+VGV  L  +C  C  C+ G E  C +   T  S+D       G ++   + D  +V R P  +     AP+LCAG+TVY  +K
Sbjct:   24 QPGPGQVLIKYEATGVCHTDLHAAKGDWPVRPNPPFIPGHEGVGYVAKLGAEVTRLKEGDRVGVPWLHTACGCCTPCRTGWETLCGSQQNTGYSVD-------GTFAQYGLADPDFVGRLPARLEFGPAAPVLCAGVTVYKGLK 160          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH2_EMENI (Alcohol dehydrogenase 2 OS=Emericella nidulans GN=alcB PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 64/181 (35.36%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  109 SPETEQPQKAIGWAARDNTGTFSP--FHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPG----HEIVGTVTKVGNNV--SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            +PE  + QKA+ +   DN GT S         E G ++V I +   G+CHSD     N W +  +P  PG    HE VG V K+G     S  K GD+VGV  + ++C +C  CQ G +  C N  ++       G  T G +   ++    YV   PD +P    APLLCAG+TVY+ +K
Sbjct:    3 APEIPKKQKAVIY---DNPGTVSTKVVELDVPEPGDNEVLINLTHSGVCHSDFGIMTNTWKILPFPTQPGQVGGHEGVGKVVKLGAGAEASGLKIGDRVGVKWISSACGQCPPCQDGADGLCFNQKVS-------GYYTPGTFQQYVLGPAQYVTPIPDGLPSAEAAPLLCAGVTVYASLK 173          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH1_NEUCR (Alcohol dehydrogenase 1 OS=Neurospora crassa GN=adh-1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 55/177 (31.07%), Postives = 86/177 (48.59%), Query Frame = 1
Query:  112 PETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 639
            P+ E P++          G         ++ G D+V I + + G+CH+DLH  + +W + T  P+V GHE  G V   G  V++ + GD  G+  L  SC  C  C Q  E  CP+ +L+  ++D       G +    +    +V + P    L+  AP+LCAGITVY  +K  G+
Sbjct:    2 PQFEIPEQQWAQVVEKKGGPVVFKQIPVQKPGPDEVLINVKYSGVCHTDLHAMKGDWPLATKMPLVGGHEGAGVVVAKGELVTEVEVGDHAGIKWLNGSCLACSFCMQADEPLCPHALLSGYTVD-------GSFQQYAIAKAAHVAKIPKGCDLETTAPVLCAGITVYKGLKESGV 171          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH1_EMENI (Alcohol dehydrogenase 1 OS=Emericella nidulans GN=alcA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 52/146 (35.62%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  205 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 639
            G D + +KI + G+CH+DLH     W +    P+V GHE  G V   G  V +F+ GD+ G+  L  SC +CE C+Q  +  C    L+  ++D       G +    +    +  + P  +PLDA AP+LCAGITVY  +K  G+
Sbjct:   30 GPDQILVKIRYSGVCHTDLHAMMGHWPIPVKMPLVGGHEGAGIVVAKGELVHEFEIGDQAGIKWLNGSCGECEFCRQSDDPLCARAQLSGYTVD-------GTFQQYALGKASHASKIPAGVPLDAAAPVLCAGITVYKGLKEAGV 168          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_STAES (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=adh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 48/149 (32.21%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  196 RETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 639
            RE    +  +K  +CG+CH+DLH    ++G VT   +  GHE +G V K+ +NV   K GD+V +  + A+C  CE C  G E  C +++    ++D       G  ++ ++VD +Y ++ P+N+   A + + CAG+T Y  +K  G+
Sbjct:   20 RELRPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGRVIKIADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVD-------GAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGI 159          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH5_YEAST (Alcohol dehydrogenase 5 OS=Saccharomyces cerevisiae GN=ADH5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            E   +++ + + + G+CHSDLH    +W     +P++ GHE  G V K+G+NV  +K GD  G+  L  +C  CE C+ G E+ CP        +D  G    G + +    D       P N+ L   AP+LCAGITVY  +K
Sbjct:   31 EPKPNEILVHVKYSGVCHSDLHAWHGDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCP-------YLDGTGFTHDGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITVYKALK 167          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH5_SACPS (Alcohol dehydrogenase 5 OS=Saccharomyces pastorianus GN=ADH5 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            E   +++ + + + G+CHSDLH    +W     +P++ GHE  G V K+G+NV  +K GD  G+  L  +C  CE C+ G E+ CP        +D  G    G + +    D       P N+ L   AP+LCAGITVY  +K
Sbjct:   31 EPKPNEILVHVKYSGVCHSDLHAWHGDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCP-------YLDGTGFTHDGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITVYKALK 167          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 48/149 (32.21%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  196 RETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 639
            RE    +  +K  +CG+CH+DLH    ++G VT   +  GHE +G V +V +NV   K GD+V +  + A+C  CE C  G E  C +++    ++D       G  ++ ++VD +Y ++ P+N+   A + + CAG+T Y  +K  G+
Sbjct:   20 RELKPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVD-------GAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGI 159          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH2_CANAL (Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 1
Query:  208 ADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            A+++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV  +K GD  GV  L  SC  CE CQ G E  C          D  G    G +      D     R P    L   AP+LCAG+TVY  +K
Sbjct:   31 ANELLINVKYSGVCHTDLHAWKGDWPLATKLPLVGGHEGAGVVVALGENVKGWKVGDYAGVKWLNGSCLNCEYCQSGAEPNCA-------EADLSGYTHDGSFQQYATADAVQAARIPAGTDLANVAPILCAGVTVYKALK 164          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH3_YEAST (Alcohol dehydrogenase 3, mitochondrial OS=Saccharomyces cerevisiae GN=ADH3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            E   +++ I + + G+CH+DLH    +W +    P+V GHE  G V K+G+NV  +K GD  G+  L  SC  CE C+ G E+ CP+        D  G    G +      D     +      L   AP+LCAG+TVY  +K
Sbjct:   55 EPKPNEILINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVKLGSNVKGWKVGDLAGIKWLNGSCMTCEFCESGHESNCPD-------ADLSGYTHDGSFQQFATADAIQAAKIQQGTDLAEVAPILCAGVTVYKALK 191          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADHA_RHIME9.459e-2339.58Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]
ADH2_EMENI1.046e-2135.36Alcohol dehydrogenase 2 OS=Emericella nidulans GN=... [more]
ADH1_NEUCR2.330e-2131.07Alcohol dehydrogenase 1 OS=Neurospora crassa GN=ad... [more]
ADH1_EMENI6.779e-2135.62Alcohol dehydrogenase 1 OS=Emericella nidulans GN=... [more]
ADH_STAES1.972e-2032.21Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH5_YEAST1.972e-2034.72Alcohol dehydrogenase 5 OS=Saccharomyces cerevisia... [more]
ADH5_SACPS1.972e-2034.72Alcohol dehydrogenase 5 OS=Saccharomyces pastorian... [more]
ADH_STAEQ4.394e-2032.21Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH2_CANAL1.278e-1936.88Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH... [more]
ADH3_YEAST1.670e-1934.03Alcohol dehydrogenase 3, mitochondrial OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
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