FC920823

Overview
NameFC920823
Unique NameFC920823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920823_ssr85 microsatellite FC920823_ssr85:85..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_STAAC (Alcohol dehydrogenase OS=Staphylococcus aureus (strain COL) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_STAAB (Alcohol dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_STAA8 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_STAA3 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH1_ZYMMO (Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=adhA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 41/138 (29.71%), Postives = 66/138 (47.83%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            +  +++ +CG+CH+DLH    ++G     I  GHE +G V +VG  V+  K GD+  V      C  CE C  G E  C N       ++  G    G  ++  +V   Y ++ PD +     + + CAG+T Y  +K
Sbjct:   26 EALLEMEYCGVCHTDLHVKNGDFGDETGRIT-GHEGIGIVKQVGEGVTSLKVGDRASVAWFFKGCGHCEYCVSGNETLCRN-------VENAGYTVDGAMAEECIVVADYSVKVPDGLDPAVASSITCAGVTTYKAVK 155          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  211 DDVTIKILFCGICHSDLHCARNEWGVTNY----PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM-ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA 585
            D+V IK++  GIC SDLH   N   + NY    P + GHE  G +  VG++V +FK GD+V V   V +C +CE+C++G  N CP++  L    +D       G +   I + Q +V   PD++  +  A
Sbjct:   33 DEVLIKVMAVGICGSDLHYYTNG-RIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGV-TCGRCEACKEGRYNLCPDVQFLATPPVD-------GAFVQYIKMRQDFVFLIPDSLSYEEAA 153          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH_SULAC (NAD-dependent alcohol dehydrogenase OS=Sulfolobus acidocaldarius GN=adh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 43/149 (28.86%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCA------RNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 627
            + G   V +K+ + G+CH+DL         R        P+V GHEI G V ++G NV  FK+ DKV +   +     C  C+ G + YC N           G    GGY + ++V  +  +    N+     +PL C+G+T Y  ++
Sbjct:   22 KVGVGQVLVKVDYAGVCHTDLSVRSGAIFNRISSSKPTLPLVIGHEIAGEVVELGGNVEGFKKSDKVLIDPWIGD-GSCHYCKIGEDQYCDNPKWL-------GINVNGGYGEYVLVPDYRYMFKLRNLSTSTASPLACSGVTAYRALR 162          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: BDH1_YEAST ((R,R)-butanediol dehydrogenase OS=Saccharomyces cerevisiae GN=BDH1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 48/153 (31.37%), Postives = 72/153 (47.06%), Query Frame = 1
Query:  211 DDVTIKILFCGICHSDLH--------------CARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASC--------------QKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA 585
            D+V I + +CGIC SDLH              C  ++      P+  GHE+ G V+KVG  V+K K GD V V    +SC              + C++CQ+G EN C +       +        GG+++ +VV QH+++  P  +PLD  A
Sbjct:   27 DEVIIDVSWCGICGSDLHEYLDGPIFMPKDGEC--HKLSNAALPLAMGHEMSGIVSKVGPKVTKVKVGDHVVVDA-ASSCADLHCWPHSKFYNSKPCDACQRGSENLCTHAGFVGLGV------ISGGFAEQVVVSQHHIIPVPKEIPLDVAA 170          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 46/159 (28.93%), Postives = 71/159 (44.65%), Query Frame = 1
Query:  214 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTY-------------GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 648
            +V +KI+  GIC SD H          +P++ GHE  G V  VG  V+KFK GDKV + + V  C +C  C+    N C  N I  Y+ +  D T  +               +++  V+D+  V +  ++ PL+    + C   T Y      G  +P
Sbjct:   35 EVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKV-IPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLLDKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVKP 192          
BLAST of FC920823 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 46/148 (31.08%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  199 ETGADDVTIKILFCGICHSDLHCAR-NEWGVTNYPI--VPGHEIVGTVTKVGNNVSKFKEGDKV-GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 630
            E G +DV IKI    IC +D+H    ++W     P+  V GHE VGTV   G  V+++K G +V G G +V  C  C +C+ G  + C N +         G    G + + + + QH V+  PD++P +  A     G  V++ + +
Sbjct:   26 EIGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFGAAVTEYKVGQRVSGEGHIV--CGHCRNCRAGRGHLCRNTLGV-------GVNRPGAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVHTALSF 164          
The following BLAST results are available for this feature:
BLAST of FC920823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADH_STAAC3.849e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAB3.849e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA83.849e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA33.849e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH1_ZYMMO5.558e-1529.71Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=ad... [more]
DHSO_BACSU3.050e-1335.38Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
ADH_SULAC3.983e-1328.86NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
BDH1_YEAST3.372e-1231.37(R,R)-butanediol dehydrogenase OS=Saccharomyces ce... [more]
ADH1_RANPE3.372e-1228.93Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
TDH_RHILO5.752e-1231.08L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]

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Properties
Property NameValue
Genbank descriptionC32013E03EF RVDevelop1 Citrus clementina cDNA clone C32013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920823 ID=FC920823; Name=FC920823; organism=Citrus clementina; type=EST; length=695bp
GATTGCCTCAGAAATCACAAGCCCCCTTCTTCTATCATTATTACGCACAT
TTCATTGTTTAAGTGAGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCA
TGGCAAAATCACCAGAAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCT
GCCAGAGACAACACTGGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGA
AACTGGTGCTGATGATGTAACTATTAAGATCCTCTTTTGTGGGATTTGCC
ACTCGGACTTGCATTGTGCCAGAAATGAATGGGGTGTCACCAATTACCCA
ATTGTTCCCGGGCATGAAATTGTTGGTACTGTGACAAAAGTTGGAAATAA
CGTGTCAAAATTCAAAGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAG
CCTCCTGCCAAAAATGTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGT
CCTAATATGATACTTACATATAACTCCATTGATCGTGATGGAACAAAAAC
TTATGGTGGTTACTCAGATCTGATTGTTGTTGATCAGCATTATGTGCTCC
GCTTTCCTGACAACATGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCG
GGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACTGAGCCAGG
CAAGCATTTGGGTGTAGCAGGACTTGGTGGGCTTGGCCATGTTGC
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