FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.107e-38 Identity = 79/162 (48.77%), Postives = 107/162 (66.05%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE++G+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG P+ L++ E ENV Sbjct: 6 VKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38 Identity = 80/162 (49.38%), Postives = 111/162 (68.52%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE++G+ L+L+ A ++A +VHR+L M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KEKRL E+ IV+E+ +F +PKTKE ++A+ RWG+ + L++ E ENV Sbjct: 6 VKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNY3 (50S ribosomal protein L4 OS=Synechocystis sp. (strain PCC 6803) GN=rplD PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 8.006e-38 Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE++G L L+ A + A +VHRAL+ N R+G AS TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RL +N +VVE F +F +PKTKE A+ RWG P++ L++ E+ ENV Sbjct: 6 VKNWQGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTAIASRADNMVVVEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILDEIPENV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ACAM1 (50S ribosomal protein L4 OS=Acaryochloris marina (strain MBIC 11017) GN=rplD PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 6.777e-37 Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE G+ LDLK A + A +VHRAL M N R+GTAS+ TR EVRGGGRKP+ QK TGRAR GS+R+PL GGGV+FGPKPR +S K+N+KE+RL E+ +VVE+F RPKTK+ +EAM RWG++ L++ + + + Sbjct: 6 VRNWQGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRL--ALRTAFASRAEDLVVVEDFGDNLSRPKTKDLLEAMGRWGVNADSKTLLILADKHDTI 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM4 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplD PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 5.737e-36 Identity = 74/160 (46.25%), Postives = 108/160 (67.50%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 +L + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +S+ +N+KE+RL + ++V++F + PKT+E +EA+ R+G+ +++ + SE Sbjct: 6 VLDWQGQEAGKATLDLKVAKETTAVDLIHRAVVRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSFSLGMNRKERRL--ALRTALMARINDLMIVQDFGTALKVPKTREIVEALSRFGIADDAKVLIILAQPSE 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_GLOVI (50S ribosomal protein L4 OS=Gloeobacter violaceus GN=rplD PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 9.787e-36 Identity = 80/156 (51.28%), Postives = 102/156 (65.38%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587 I + G GE LDL A+ TA VV+ A M N R+GTASTLTRGEVRGGGRKP+ QK TGRAR GS R+PL GGV+FGPKPRD+ IK+N+KE+RL E+ IVV+EF+G+ PKT+E ++A RWG+ + LL++ Sbjct: 6 IKDWQGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRL--ALRTALQSRVEDLIVVDEFEGQLAAPKTRELVQAFERWGVDMASQSILLIL 159
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNP6 (50S ribosomal protein L4 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplD PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35 Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 I + G+ G ++L+ A ++A A+VHRALI + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S+K+N+KE+RL + +VV+EF + RPKT++ EA+ RWG+ P L+ + +NV Sbjct: 6 IQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNE7 (50S ribosomal protein L4 OS=Synechococcus elongatus (strain PCC 7942) GN=rplD PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35 Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 I + G+ G ++L+ A ++A A+VHRALI + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S+K+N+KE+RL + +VV+EF + RPKT++ EA+ RWG+ P L+ + +NV Sbjct: 6 IQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMP (50S ribosomal protein L4 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplD PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35 Identity = 75/162 (46.30%), Postives = 105/162 (64.81%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 L L + G+K G+ +DLK A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL T VE+F ++PKT E I + R G+ + +++ S+ Sbjct: 4 LETLKWDGKKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRISDFKT--VEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVILDNPSD 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM5 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplD PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35 Identity = 74/162 (45.68%), Postives = 106/162 (65.43%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 L L + G+K+G+ +DLK A ++ ++HRA++ + N+R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL ++ VE+F +PKT E I + R G+ + +++ SE Sbjct: 4 LETLKWDGKKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRL--ALRTALMSRVDDIKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVILDSPSE 163 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |