FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.107e-38
Identity = 79/162 (48.77%), Postives = 107/162 (66.05%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE++G+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG  P+    L++ E  ENV
Sbjct:    6 VKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38
Identity = 80/162 (49.38%), Postives = 111/162 (68.52%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE++G+  L+L+ A  ++A  +VHR+L   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KEKRL            E+ IV+E+   +F +PKTKE ++A+ RWG+  +    L++ E  ENV
Sbjct:    6 VKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNY3 (50S ribosomal protein L4 OS=Synechocystis sp. (strain PCC 6803) GN=rplD PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.006e-38
Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE++G   L L+ A  + A  +VHRAL+    N R+G AS  TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KE+RL            +N +VVE F  +F +PKTKE   A+ RWG  P++   L++ E+ ENV
Sbjct:    6 VKNWQGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTAIASRADNMVVVEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILDEIPENV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ACAM1 (50S ribosomal protein L4 OS=Acaryochloris marina (strain MBIC 11017) GN=rplD PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.777e-37
Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE  G+  LDLK A  + A  +VHRAL   M N R+GTAS+ TR EVRGGGRKP+ QK TGRAR GS+R+PL  GGGV+FGPKPR +S K+N+KE+RL            E+ +VVE+F     RPKTK+ +EAM RWG++      L++ +  + +
Sbjct:    6 VRNWQGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRL--ALRTAFASRAEDLVVVEDFGDNLSRPKTKDLLEAMGRWGVNADSKTLLILADKHDTI 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM4 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.737e-36
Identity = 74/160 (46.25%), Postives = 108/160 (67.50%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            +L + G++ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +S+ +N+KE+RL             + ++V++F    + PKT+E +EA+ R+G+       +++ + SE
Sbjct:    6 VLDWQGQEAGKATLDLKVAKETTAVDLIHRAVVRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSFSLGMNRKERRL--ALRTALMARINDLMIVQDFGTALKVPKTREIVEALSRFGIADDAKVLIILAQPSE 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_GLOVI (50S ribosomal protein L4 OS=Gloeobacter violaceus GN=rplD PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.787e-36
Identity = 80/156 (51.28%), Postives = 102/156 (65.38%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587
            I  + G   GE  LDL  A+  TA  VV+ A    M N R+GTASTLTRGEVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGPKPRD+ IK+N+KE+RL            E+ IVV+EF+G+   PKT+E ++A  RWG+     + LL++
Sbjct:    6 IKDWQGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRL--ALRTALQSRVEDLIVVDEFEGQLAAPKTRELVQAFERWGVDMASQSILLIL 159          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNP6 (50S ribosomal protein L4 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplD PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35
Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            I  + G+  G   ++L+ A  ++A A+VHRALI  + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S+K+N+KE+RL             + +VV+EF  +  RPKT++  EA+ RWG+ P     L+  +  +NV
Sbjct:    6 IQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNE7 (50S ribosomal protein L4 OS=Synechococcus elongatus (strain PCC 7942) GN=rplD PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35
Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            I  + G+  G   ++L+ A  ++A A+VHRALI  + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S+K+N+KE+RL             + +VV+EF  +  RPKT++  EA+ RWG+ P     L+  +  +NV
Sbjct:    6 IQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMP (50S ribosomal protein L4 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplD PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35
Identity = 75/162 (46.30%), Postives = 105/162 (64.81%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            L  L + G+K G+  +DLK A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL              T  VE+F    ++PKT E I  + R G+   +   +++   S+
Sbjct:    4 LETLKWDGKKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRISDFKT--VEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVILDNPSD 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM5 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplD PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35
Identity = 74/162 (45.68%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            L  L + G+K+G+  +DLK A   ++  ++HRA++  + N+R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL            ++   VE+F     +PKT E I  + R G+   +   +++   SE
Sbjct:    4 LETLKWDGKKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRL--ALRTALMSRVDDIKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVILDSPSE 163          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_ANAVT2.107e-3848.7750S ribosomal protein L4 OS=Anabaena variabilis (s... [more]
RL4_TRIEI6.130e-3849.3850S ribosomal protein L4 OS=Trichodesmium erythrae... [more]
RL4_SYNY38.006e-3848.7750S ribosomal protein L4 OS=Synechocystis sp. (str... [more]
RL4_ACAM16.777e-3748.1550S ribosomal protein L4 OS=Acaryochloris marina (... [more]
RL4_PROM45.737e-3646.2550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_GLOVI9.787e-3651.2850S ribosomal protein L4 OS=Gloeobacter violaceus ... [more]
RL4_SYNP61.669e-3546.3050S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_SYNE71.669e-3546.3050S ribosomal protein L4 OS=Synechococcus elongatu... [more]
RL4_PROMP1.669e-3546.3050S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROM51.669e-3545.6850S ribosomal protein L4 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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