FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:413..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNPX (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH8102) GN=rplD PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.180e-35
Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            I  + G++ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL            E+  VV++F    E PKTKE  +A+ R G+       +++ E S+ V
Sbjct:    6 IRDWQGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRL--ALRTALMARVEDVTVVKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMT (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain NATL2A) GN=rplD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.285e-35
Identity = 71/160 (44.38%), Postives = 108/160 (67.50%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            +L + G++ GE+ +DLK+A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++++N+KE+RL             +  ++++F  K E PKT E +  ++R G+       +++ + SE
Sbjct:    6 VLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRL--ALRTALMSRIPDAKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSE 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM9 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.082e-34
Identity = 73/159 (45.91%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  123 LSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            L + G+K GE  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+   +   +++   SE
Sbjct:    7 LKWDGKKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRISDVKAVEDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVILDSPSE 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNPW (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH7803) GN=rplD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.413e-34
Identity = 74/160 (46.25%), Postives = 105/160 (65.62%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            +  + G++ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL            ++  VV++F    E PKT+E ++A+ R G+       +++   SE
Sbjct:    6 VRDWQGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRL--ALRTALMARIDDVTVVKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSE 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM2 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.148e-34
Identity = 74/164 (45.12%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            L  L + G+K G+  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+  K    L++++   +V
Sbjct:    4 LETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQ-KNEKVLVILDSPSDV 164          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMS (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain AS9601) GN=rplD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.370e-34
Identity = 72/162 (44.44%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            L  L + G+K G+  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+   +   +++   S+
Sbjct:    4 LETLKWDGKKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSD 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM0 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.370e-34
Identity = 72/162 (44.44%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            L  L + G+K G+  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+   +   +++   S+
Sbjct:    4 LETLKWDGKKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDIKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSD 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNSC (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9605) GN=rplD PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.562e-33
Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554
            +  + G++ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPL+PGGG++FGPKPR +++ +N+KE+RL            ++  VV++F    E PKT+E  +A+ R G+
Sbjct:    6 VRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIDDVTVVQDFGASLEAPKTREITDALGRLGV 148          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNS3 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9311) GN=rplD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.665e-33
Identity = 73/162 (45.06%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            +  + G++ G+  LDLK A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R             E+ +VV++F      PKTKE I+A+ R  +       +++   SE V
Sbjct:    6 VRDWQGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIEDLVVVKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNS9 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9902) GN=rplD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.481e-33
Identity = 73/162 (45.06%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            +  + G++ G+  LDLK A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R             ++  VV++F    E PKT+E  EA+ R G+       +++   SE V
Sbjct:    6 VRDWQGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIDDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMV 165          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_SYNPX2.180e-3548.1550S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_PROMT8.285e-3544.3850S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROM91.082e-3445.9150S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_SYNPW1.413e-3446.2550S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_PROM23.148e-3445.1250S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROMS5.370e-3444.4450S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROM05.370e-3444.4450S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_SYNSC1.562e-3348.2850S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_SYNS32.665e-3345.0650S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_SYNS93.481e-3345.0650S ribosomal protein L4 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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