FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNPX (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH8102) GN=rplD PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.180e-35 Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 I + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL E+ VV++F E PKTKE +A+ R G+ +++ E S+ V Sbjct: 6 IRDWQGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRL--ALRTALMARVEDVTVVKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMT (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain NATL2A) GN=rplD PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 8.285e-35 Identity = 71/160 (44.38%), Postives = 108/160 (67.50%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 +L + G++ GE+ +DLK+A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++++N+KE+RL + ++++F K E PKT E + ++R G+ +++ + SE Sbjct: 6 VLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRL--ALRTALMSRIPDAKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSE 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM9 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplD PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.082e-34 Identity = 73/159 (45.91%), Postives = 103/159 (64.78%), Query Frame = 3 Query: 123 LSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 L + G+K GE LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ + +++ SE Sbjct: 7 LKWDGKKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRISDVKAVEDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVILDSPSE 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNPW (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH7803) GN=rplD PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.413e-34 Identity = 74/160 (46.25%), Postives = 105/160 (65.62%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 + + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL ++ VV++F E PKT+E ++A+ R G+ +++ SE Sbjct: 6 VRDWQGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRL--ALRTALMARIDDVTVVKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSE 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM2 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplD PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.148e-34 Identity = 74/164 (45.12%), Postives = 106/164 (64.63%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 L L + G+K G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ K L++++ +V Sbjct: 4 LETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQ-KNEKVLVILDSPSDV 164
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMS (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain AS9601) GN=rplD PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.370e-34 Identity = 72/162 (44.44%), Postives = 104/162 (64.20%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 L L + G+K G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ + +++ S+ Sbjct: 4 LETLKWDGKKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSD 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM0 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplD PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.370e-34 Identity = 72/162 (44.44%), Postives = 104/162 (64.20%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 L L + G+K G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ + +++ S+ Sbjct: 4 LETLKWDGKKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDIKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSD 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNSC (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9605) GN=rplD PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.562e-33 Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554 + + G++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPL+PGGG++FGPKPR +++ +N+KE+RL ++ VV++F E PKT+E +A+ R G+ Sbjct: 6 VRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIDDVTVVQDFGASLEAPKTREITDALGRLGV 148
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNS3 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9311) GN=rplD PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.665e-33 Identity = 73/162 (45.06%), Postives = 104/162 (64.20%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + + G++ G+ LDLK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R E+ +VV++F PKTKE I+A+ R + +++ SE V Sbjct: 6 VRDWQGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIEDLVVVKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNS9 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9902) GN=rplD PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.481e-33 Identity = 73/162 (45.06%), Postives = 104/162 (64.20%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + + G++ G+ LDLK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R ++ VV++F E PKT+E EA+ R G+ +++ SE V Sbjct: 6 VRDWQGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIDDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMV 165 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |