FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMM (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.546e-33
Identity = 72/155 (46.45%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            G++ G+  L+LK +   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL            E+ IVV++F    + PKT+E  +A+ R GL       +++   SE
Sbjct:   11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIEDVIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSE 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMA (50S ribosomal protein L4 OS=Prochlorococcus marinus GN=rplD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.937e-33
Identity = 70/160 (43.75%), Postives = 104/160 (65.00%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            +L + G++ G+  L+LK A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             + I V++F  K + PKTKE  + + R  +       +++ + S+
Sbjct:    6 VLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRL--ALRTALMARFNDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSD 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM3 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.754e-33
Identity = 71/155 (45.81%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            G++ G+  L+LK +   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL            E+ IVV++F    + PKT+E  +A+ R G+       +++   SE
Sbjct:   11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARLEDVIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSE 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_PORPU (50S ribosomal protein L4, chloroplastic OS=Porphyra purpurea GN=rpl4 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.013e-32
Identity = 77/162 (47.53%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ G+  G   L+LK  + D+   +VHRAL+     KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPR ++ K+NKKE +L             NT+VVE FD  F++PKTK FIEA+ RW L   +   ++V +   NV
Sbjct:   11 VYNWEGQVSGNADLNLK-ISKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNKSV--NTLVVENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNV 169          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_PORYE (50S ribosomal protein L4, chloroplastic OS=Porphyra yezoensis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.256e-32
Identity = 74/162 (45.68%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ G+  G   L+LK  + D+   +VHRAL+     KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPR ++ K+NKKE++L             NT++VE F+  F +PKTK F+EA+ RW L   +   ++V +   NV
Sbjct:   11 VYNWEGQVSGNADLNLK-VSQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNKSV--NTLIVENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNV 169          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNJB (50S ribosomal protein L4 OS=Synechococcus sp. GN=rplD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31
Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE +G   L LK A P+TA  +++ AL   M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGP+ R++++ +N+KE++L            E+ IVVE+F  +   PKT+   +A+ RWG+   Q A L+V E SE V
Sbjct:    6 VKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNJA (50S ribosomal protein L4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31
Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + ++ GE +G   L LK A P+TA  +++ AL   M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGP+ R++++ +N+KE++L            E+ IVVE+F  +   PKT+   +A+ RWG+   Q A L+V E SE V
Sbjct:    6 VKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THETN (50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis GN=rplD PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.977e-28
Identity = 72/164 (43.90%), Postives = 100/164 (60.98%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            +P+ +  GE++GE  L           AV+H+A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GGVVFGPKPRD+S K+ KK KRL               IV++EF  K E+PKTK+  E ++ +     + A ++V +  +NV
Sbjct:    4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLEQPKTKKVAELLKNFN---AKSALIVVPQGEKNV 162          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27
Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + +  GE++GE  L            V+H A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GG+VFGPKPRD+S K+ KK KRL               IV++EF  K ++PKTK+ +E ++ + +     A ++V E  +NV
Sbjct:    6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNV---DSALIVVPEGEKNV 162          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27
Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + +  GE++GE  L            V+H A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GG+VFGPKPRD+S K+ KK KRL               IV++EF  K ++PKTK+ +E ++ + +     A ++V E  +NV
Sbjct:    6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNV---DSALIVVPEGEKNV 162          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PROMM4.546e-3346.4550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROMA5.937e-3343.7550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROM37.754e-3345.8150S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RK4_PORPU1.013e-3247.5350S ribosomal protein L4, chloroplastic OS=Porphyr... [more]
RK4_PORYE2.256e-3245.6850S ribosomal protein L4, chloroplastic OS=Porphyr... [more]
RL4_SYNJB1.120e-3145.0650S ribosomal protein L4 OS=Synechococcus sp. GN=r... [more]
RL4_SYNJA1.120e-3145.0650S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_THETN1.977e-2843.9050S ribosomal protein L4 OS=Thermoanaerobacter ten... [more]
RL4_THEPX3.728e-2742.5950S ribosomal protein L4 OS=Thermoanaerobacter sp.... [more]
RL4_THEP33.728e-2742.5950S ribosomal protein L4 OS=Thermoanaerobacter pse... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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