FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMM (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplD PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 4.546e-33 Identity = 72/155 (46.45%), Postives = 103/155 (66.45%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 G++ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL E+ IVV++F + PKT+E +A+ R GL +++ SE Sbjct: 11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIEDVIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSE 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROMA (50S ribosomal protein L4 OS=Prochlorococcus marinus GN=rplD PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 5.937e-33 Identity = 70/160 (43.75%), Postives = 104/160 (65.00%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 +L + G++ G+ L+LK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + I V++F K + PKTKE + + R + +++ + S+ Sbjct: 6 VLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRL--ALRTALMARFNDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSD 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROM3 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplD PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 7.754e-33 Identity = 71/155 (45.81%), Postives = 103/155 (66.45%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 G++ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL E+ IVV++F + PKT+E +A+ R G+ +++ SE Sbjct: 11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARLEDVIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSE 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_PORPU (50S ribosomal protein L4, chloroplastic OS=Porphyra purpurea GN=rpl4 PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.013e-32 Identity = 77/162 (47.53%), Postives = 104/162 (64.20%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ G+ G L+LK + D+ +VHRAL+ KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE +L NT+VVE FD F++PKTK FIEA+ RW L + ++V + NV Sbjct: 11 VYNWEGQVSGNADLNLK-ISKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNKSV--NTLVVENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNV 169
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_PORYE (50S ribosomal protein L4, chloroplastic OS=Porphyra yezoensis GN=rpl4 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.256e-32 Identity = 74/162 (45.68%), Postives = 104/162 (64.20%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ G+ G L+LK + D+ +VHRAL+ KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE++L NT++VE F+ F +PKTK F+EA+ RW L + ++V + NV Sbjct: 11 VYNWEGQVSGNADLNLK-VSQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNKSV--NTLIVENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNV 169
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNJB (50S ribosomal protein L4 OS=Synechococcus sp. GN=rplD PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31 Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++L E+ IVVE+F + PKT+ +A+ RWG+ Q A L+V E SE V Sbjct: 6 VKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_SYNJA (50S ribosomal protein L4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplD PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31 Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + ++ GE +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++L E+ IVVE+F + PKT+ +A+ RWG+ Q A L+V E SE V Sbjct: 6 VKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THETN (50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis GN=rplD PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.977e-28 Identity = 72/164 (43.90%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 +P+ + GE++GE L AV+H+A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GGVVFGPKPRD+S K+ KK KRL IV++EF K E+PKTK+ E ++ + + A ++V + +NV Sbjct: 4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLEQPKTKKVAELLKNFN---AKSALIVVPQGEKNV 162
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27 Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + + GE++GE L V+H A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRL IV++EF K ++PKTK+ +E ++ + + A ++V E +NV Sbjct: 6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNV---DSALIVVPEGEKNV 162
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27 Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + + GE++GE L V+H A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRL IV++EF K ++PKTK+ +E ++ + + A ++V E +NV Sbjct: 6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNV---DSALIVVPEGEKNV 162 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |