FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_HALOH (50S ribosomal protein L4 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplD PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26 Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 3 Query: 132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLL 581 TG ++G+ L + VVH+ + + RRGTAST TRGEV GGGRKP+ QK TGRAR GS R+PL GGG+VFGP+PR K+ KK K+L E I+++E KF+ PKTK+ +E + L K++ +L Sbjct: 10 TGNRVGDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGGGRKPWRQKGTGRARHGSIRSPLWVGGGIVFGPRPRKHIKKVPKKVKKLALRSILSYKSQNEELIILDEL--KFDTPKTKQVVELLSNLNLEGKKVLIIL 157
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEMA (50S ribosomal protein L4 OS=Thermotoga maritima GN=rplD PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26 Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 +L+ GEK+G + D V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GGVV GPKPRDWS K+NKK K+L +V++ D K ERPKTK E ++ L K+ TL+V+ E Sbjct: 6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLD--DLKLERPKTKSLKEILQNLQLSDKK--TLIVLPWKE 161
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THENN (50S ribosomal protein L4 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplD PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26 Identity = 69/154 (44.81%), Postives = 87/154 (56.49%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLL 581 +L+ GEK+G + D V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GGV GPKPRDWS K+NKK KRL +V+E D K ERPKTK E ++ L K+ +L Sbjct: 6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRENKLLVLE--DLKLERPKTKSLKEILQNLDLADKKALIVL 157
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_GRATL (50S ribosomal protein L4, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl4 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26 Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 3 Query: 132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 T EK E + S + ++HRALI + N R A T TRGEV GGGRKP+ QK TGRAR GSNR+PL GGGV+FGP+ + + KINKKEK+L +NTIV E F K P TK + ++++ L ++V E S ++ Sbjct: 17 TKEKESEEIVVKLSKQSNKKIYILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFGPRHKKYVNKINKKEKQL--ALRILINNKFKNTIVTENFISKISTPNTKILVNNLKKYNLDTNNNILIIVNEKSNDL 172
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_NATTJ (50S ribosomal protein L4 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplD PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.199e-25 Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPK 563 G ++GE LD A D ++H A+ + +KRRGTAS TR EVRGGGRKP+ QK TGRAR GS R+P+ GGG+ F PKPRD+S K+ KK KR +++EE E PKTK+ IE + ++ K Sbjct: 11 GSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGGGRKPWRQKGTGRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNNGEIVILEEL--TMEAPKTKKIIEMLENLSINHK 151
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEM4 (50S ribosomal protein L4 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplD PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25 Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 + + GE IG L + A + + V+ R + + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P GGV GPKPR + ++NKK KRL N +VV+ D KFE+P+TK+ E ++ GL +++ +L + SE Sbjct: 6 LFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD--DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESE 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEAB (50S ribosomal protein L4 OS=Thermosipho africanus (strain TCF52B) GN=rplD PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25 Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 GE IG L + A + V+ R + + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P GGV GPKPR + ++NKK KRL N IVV+E KF+RPKTK+ E ++ GL +++ +L +V E V Sbjct: 11 GENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKEGNLIVVDEI--KFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYV 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PETMO (50S ribosomal protein L4 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplD PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25 Identity = 68/159 (42.77%), Postives = 92/159 (57.86%), Query Frame = 3 Query: 108 SPLPILSFTGEKIGETYLDLKSAA--PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATL 578 S + I + EK+G LD+K D V++R + + NKR GTAST TR EV GGGRKP+ QK TGRAR GS R+PL GGV FGPKPR++ +NKK KRL N IV++E KFE+P+TK+ + ++G+ ++ L Sbjct: 2 SQIDIYNIQNEKVGT--LDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNLIVLDEV--KFEKPRTKDVKNILSKFGMEDTKVLFL 156
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_KOSOT (50S ribosomal protein L4 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplD PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25 Identity = 65/145 (44.83%), Postives = 83/145 (57.24%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554 +L+ TG KIG L + V+ R + + N+R GTA TR EV GGGRKP+ QK TGRAR GS R PL GGV+ GPKP+DWS K+NKK K+L N +VV+ D K +RPKTK+ E ++ GL Sbjct: 6 VLNVTGNKIGTVELKDSIFNIEPNYDVMFRYVDMQLANRRAGTAKAKTRSEVSGGGRKPWPQKHTGRARTGSIRNPLWRHGGVIHGPKPKDWSKKLNKKMKKLALKSALSLRFKEGNLVVVD--DIKLDRPKTKQMREIVKNLGL 148
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THESQ (50S ribosomal protein L4 OS=Thermotoga sp. (strain RQ2) GN=rplD PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24 Identity = 68/156 (43.59%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587 +L+ GEK+G + D V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GG+ GPKPRDWS K+NKK K+L V++ D K ERPKTK E ++ L K+ TL+V+ Sbjct: 6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQNLQLSDKK--TLIVL 157 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |