FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:413..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_HALOH (50S ribosomal protein L4 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLL 581
            TG ++G+  L       +    VVH+ +   +   RRGTAST TRGEV GGGRKP+ QK TGRAR GS R+PL  GGG+VFGP+PR    K+ KK K+L            E  I+++E   KF+ PKTK+ +E +    L  K++  +L
Sbjct:   10 TGNRVGDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGGGRKPWRQKGTGRARHGSIRSPLWVGGGIVFGPRPRKHIKKVPKKVKKLALRSILSYKSQNEELIILDEL--KFDTPKTKQVVELLSNLNLEGKKVLIIL 157          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEMA (50S ribosomal protein L4 OS=Thermotoga maritima GN=rplD PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            +L+  GEK+G   +       D    V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GGVV GPKPRDWS K+NKK K+L               +V++  D K ERPKTK   E ++   L  K+  TL+V+   E
Sbjct:    6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLD--DLKLERPKTKSLKEILQNLQLSDKK--TLIVLPWKE 161          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THENN (50S ribosomal protein L4 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26
Identity = 69/154 (44.81%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLL 581
            +L+  GEK+G   +       D    V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GGV  GPKPRDWS K+NKK KRL               +V+E  D K ERPKTK   E ++   L  K+   +L
Sbjct:    6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRENKLLVLE--DLKLERPKTKSLKEILQNLDLADKKALIVL 157          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_GRATL (50S ribosomal protein L4, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl4 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            T EK  E  +   S   +    ++HRALI  + N R   A T TRGEV GGGRKP+ QK TGRAR GSNR+PL  GGGV+FGP+ + +  KINKKEK+L            +NTIV E F  K   P TK  +  ++++ L       ++V E S ++
Sbjct:   17 TKEKESEEIVVKLSKQSNKKIYILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFGPRHKKYVNKINKKEKQL--ALRILINNKFKNTIVTENFISKISTPNTKILVNNLKKYNLDTNNNILIIVNEKSNDL 172          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_NATTJ (50S ribosomal protein L4 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.199e-25
Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPK 563
            G ++GE  LD    A D    ++H A+   + +KRRGTAS  TR EVRGGGRKP+ QK TGRAR GS R+P+  GGG+ F PKPRD+S K+ KK KR                +++EE     E PKTK+ IE +    ++ K
Sbjct:   11 GSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGGGRKPWRQKGTGRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNNGEIVILEEL--TMEAPKTKKIIEMLENLSINHK 151          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEM4 (50S ribosomal protein L4 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            + +  GE IG   L  +  A +  + V+ R +   + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P    GGV  GPKPR +  ++NKK KRL             N +VV+  D KFE+P+TK+  E ++  GL  +++  +L  + SE
Sbjct:    6 LFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD--DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESE 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEAB (50S ribosomal protein L4 OS=Thermosipho africanus (strain TCF52B) GN=rplD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            GE IG   L  +  A +    V+ R +   + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P    GGV  GPKPR +  ++NKK KRL             N IVV+E   KF+RPKTK+  E ++  GL  +++  +L  +V E V
Sbjct:   11 GENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKEGNLIVVDEI--KFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYV 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PETMO (50S ribosomal protein L4 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25
Identity = 68/159 (42.77%), Postives = 92/159 (57.86%), Query Frame = 3
Query:  108 SPLPILSFTGEKIGETYLDLKSAA--PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATL 578
            S + I +   EK+G   LD+K      D    V++R +   + NKR GTAST TR EV GGGRKP+ QK TGRAR GS R+PL   GGV FGPKPR++   +NKK KRL             N IV++E   KFE+P+TK+    + ++G+   ++  L
Sbjct:    2 SQIDIYNIQNEKVGT--LDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNLIVLDEV--KFEKPRTKDVKNILSKFGMEDTKVLFL 156          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_KOSOT (50S ribosomal protein L4 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25
Identity = 65/145 (44.83%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554
            +L+ TG KIG   L       +    V+ R +   + N+R GTA   TR EV GGGRKP+ QK TGRAR GS R PL   GGV+ GPKP+DWS K+NKK K+L             N +VV+  D K +RPKTK+  E ++  GL
Sbjct:    6 VLNVTGNKIGTVELKDSIFNIEPNYDVMFRYVDMQLANRRAGTAKAKTRSEVSGGGRKPWPQKHTGRARTGSIRNPLWRHGGVIHGPKPKDWSKKLNKKMKKLALKSALSLRFKEGNLVVVD--DIKLDRPKTKQMREIVKNLGL 148          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THESQ (50S ribosomal protein L4 OS=Thermotoga sp. (strain RQ2) GN=rplD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24
Identity = 68/156 (43.59%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587
            +L+  GEK+G   +       D    V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GG+  GPKPRDWS K+NKK K+L                V++  D K ERPKTK   E ++   L  K+  TL+V+
Sbjct:    6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQNLQLSDKK--TLIVL 157          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_HALOH3.156e-2642.6750S ribosomal protein L4 OS=Halothermothrix orenii... [more]
RL4_THEMA5.383e-2644.3850S ribosomal protein L4 OS=Thermotoga maritima GN... [more]
RL4_THENN7.030e-2644.8150S ribosomal protein L4 OS=Thermotoga neapolitana... [more]
RK4_GRATL7.030e-2642.4150S ribosomal protein L4, chloroplastic OS=Gracila... [more]
RL4_NATTJ1.199e-2544.0650S ribosomal protein L4 OS=Natranaerobius thermop... [more]
RL4_THEM43.489e-2541.8850S ribosomal protein L4 OS=Thermosipho melanesien... [more]
RL4_THEAB3.489e-2544.5950S ribosomal protein L4 OS=Thermosipho africanus ... [more]
RL4_PETMO5.951e-2542.7750S ribosomal protein L4 OS=Petrotoga mobilis (str... [more]
RL4_KOSOT5.951e-2544.8350S ribosomal protein L4 OS=Kosmotoga olearia (str... [more]
RL4_THESQ1.015e-2443.5950S ribosomal protein L4 OS=Thermotoga sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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