FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:413..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEP1 (50S ribosomal protein L4 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24
Identity = 68/156 (43.59%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587
            +L+  GEK+G   +       D    V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GG+  GPKPRDWS K+NKK K+L                V++  D K ERPKTK   E ++   L  K+  TL+V+
Sbjct:    6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQNLQLSDKK--TLIVL 157          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_EUBR3 (50S ribosomal protein L4 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMR 542
            + +  G+++ +  L+      +    +VH A++  + NKR+GT    TR EVRGGGRKP+ QK TG AR+GS R+P   GGGVVF P PRD+S K+NKKEKR                +VV+E   K +  KTK+F+E ++
Sbjct:    6 VYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVENKFVVVDEL--KLDEIKTKKFVEVLK 144          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_EUBE2 (50S ribosomal protein L4 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24
Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAM 539
            + +  G+++G   L+      +    +VH A++  + N R+GT S  TR EV GGGRKP+ QK TG AR+GS R+P   GGGVVF PKPRD+S K+NKKEKR+               +V++ F+   +  KTK+F E M
Sbjct:    6 VYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVADNKIVVLDAFN--LDEIKTKKFAEVM 143          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ANATD (50S ribosomal protein L4 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplD PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.261e-24
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            +P+ +  G++IGE  L+           V+H+A++  + N+R+GT +  TR EVRGGGRKP+ QK TGRAR+GS R P    GGVVF  KPRD+SI + KK KRL             N IV++ +D    + KTKE +  ++  GL   Q A +++ E +E
Sbjct:    4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNLIVLDRWD--MNQYKTKEVLRVLKNLGLE-NQKALIVIPEKNE 162          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_GEOLS (50S ribosomal protein L4 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.857e-24
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575
            + + +   EKIGE  LD +  A +    ++H+AL   + N+R GT  T TR EV GGG+KP+ QK TG AR+G +R P  PGGG VFGP+P+ +++ INKK ++             E   V+++ +  F +  TK+F   M+++ L    I T
Sbjct:    4 IALYNMNREKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGGGKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKSEKITVLDQIE--FAKISTKDFAGFMKKFDLERSLIIT 155          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CARHZ (50S ribosomal protein L4 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplD PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.580e-24
Identity = 61/152 (40.13%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569
            +P+ +  G ++GE  L  +       +AV++   +  + N+RRGT  T TRGEV GGGRKP+ QK TGRAR GS R+PL   GG+VFGP PRD+S  + KK +R              N IVV+     F  PKTKE I  +    ++ K +
Sbjct:    4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNENNLIVVDSL--TFAAPKTKEMIRVLNNLKVNGKTL 153          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_PHATR (50S ribosomal protein L4, chloroplastic OS=Phaeodactylum tricornutum GN=rpl4 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.580e-24
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  198 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590
            +VH+ LI    ++R+ T+S+ TR EVRGGGRKP+ QK TG+AR GSNR+PL  GGGV+FGPKP+  S+K+NKKE++L             N +++E  +     PKTK F++  +   ++ +Q   L+V +
Sbjct:   37 LVHKDLIRHFGSQRQATSSSKTRSEVRGGGRKPWRQKGTGKARAGSNRSPLWKGGGVIFGPKPKKISLKLNKKERQL--ALQTLIYNKKNNILIIENLETGMTEPKTKAFVKICQDCQINLEQKVLLVVTD 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MOOTA (50S ribosomal protein L4 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24
Identity = 58/157 (36.94%), Postives = 88/157 (56.05%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590
            + +  G+++GE  LD      +   AV+H A++  + ++RRGTA+T    +V GGGRKP+ QK TGRAR GS R+PL  GG V+FGP+PRD+  ++ KK +RL             N IV++E   K E+P+TK+    ++      K +      E
Sbjct:    6 LYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGGGRKPWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRDGNIIVLDEL--KMEKPRTKDMAHILKNLNAENKALVVTATRE 160          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CALS8 (50S ribosomal protein L4 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24
Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            +P+ +  G++IGE  L+           V+H+A++  + N+R+GT +  TR EVRGGGRKP+ QK TGRAR+GS R P    GGVVF  KPRD+SI + KK +RL             N IV++++D    + +TKE I  ++  GL  ++ A +++ E +E
Sbjct:    4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNLIVLDKWD--MNQYRTKEVIRVLKNLGLENEK-ALIVIPEKNE 162          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLPB (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23
Identity = 61/159 (38.36%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587
            L +L+  G + GE   L+    + + +   ++  + + M N+R+GT     R EVRGGGRKPY QK TG AR+GS R+PL  GGG +FGP+PRD+ +K+NKK K+L               +VVE+F   F++ KT++  E ++  GL  ++  TL++M
Sbjct:    3 LKVLNTGGSETGEVVTLNDAVFSAEVSEHAMYLDVKSIMANRRQGTHKAKNRSEVRGGGRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANEGGIVVVEDF--VFDQIKTRQMAEVLKNLGLDSRK--TLMLM 157          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_THEP11.015e-2443.5950S ribosomal protein L4 OS=Thermotoga petrophila ... [more]
RL4_EUBR31.732e-2441.1350S ribosomal protein L4 OS=Eubacterium rectale (s... [more]
RL4_EUBE21.732e-2441.4350S ribosomal protein L4 OS=Eubacterium eligens (s... [more]
RL4_ANATD2.261e-2440.1250S ribosomal protein L4 OS=Anaerocellum thermophi... [more]
RL4_GEOLS3.857e-2437.0150S ribosomal protein L4 OS=Geobacter lovleyi (str... [more]
RL4_CARHZ6.580e-2440.1350S ribosomal protein L4 OS=Carboxydothermus hydro... [more]
RK4_PHATR6.580e-2442.7550S ribosomal protein L4, chloroplastic OS=Phaeoda... [more]
RL4_MOOTA8.593e-2436.9450S ribosomal protein L4 OS=Moorella thermoacetica... [more]
RL4_CALS88.593e-2438.8950S ribosomal protein L4 OS=Caldicellulosiruptor s... [more]
RL4_CHLPB1.122e-2338.3650S ribosomal protein L4 OS=Chlorobium phaeobacter... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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