FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THEP1 (50S ribosomal protein L4 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplD PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24 Identity = 68/156 (43.59%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587 +L+ GEK+G + D V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GG+ GPKPRDWS K+NKK K+L V++ D K ERPKTK E ++ L K+ TL+V+ Sbjct: 6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQNLQLSDKK--TLIVL 157
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_EUBR3 (50S ribosomal protein L4 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplD PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24 Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMR 542 + + G+++ + L+ + +VH A++ + NKR+GT TR EVRGGGRKP+ QK TG AR+GS R+P GGGVVF P PRD+S K+NKKEKR +VV+E K + KTK+F+E ++ Sbjct: 6 VYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVENKFVVVDEL--KLDEIKTKKFVEVLK 144
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_EUBE2 (50S ribosomal protein L4 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplD PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24 Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAM 539 + + G+++G L+ + +VH A++ + N R+GT S TR EV GGGRKP+ QK TG AR+GS R+P GGGVVF PKPRD+S K+NKKEKR+ +V++ F+ + KTK+F E M Sbjct: 6 VYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVADNKIVVLDAFN--LDEIKTKKFAEVM 143
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ANATD (50S ribosomal protein L4 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplD PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.261e-24 Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 +P+ + G++IGE L+ V+H+A++ + N+R+GT + TR EVRGGGRKP+ QK TGRAR+GS R P GGVVF KPRD+SI + KK KRL N IV++ +D + KTKE + ++ GL Q A +++ E +E Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNLIVLDRWD--MNQYKTKEVLRVLKNLGLE-NQKALIVIPEKNE 162
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_GEOLS (50S ribosomal protein L4 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplD PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.857e-24 Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575 + + + EKIGE LD + A + ++H+AL + N+R GT T TR EV GGG+KP+ QK TG AR+G +R P PGGG VFGP+P+ +++ INKK ++ E V+++ + F + TK+F M+++ L I T Sbjct: 4 IALYNMNREKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGGGKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKSEKITVLDQIE--FAKISTKDFAGFMKKFDLERSLIIT 155
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CARHZ (50S ribosomal protein L4 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplD PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 6.580e-24 Identity = 61/152 (40.13%), Postives = 84/152 (55.26%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569 +P+ + G ++GE L + +AV++ + + N+RRGT T TRGEV GGGRKP+ QK TGRAR GS R+PL GG+VFGP PRD+S + KK +R N IVV+ F PKTKE I + ++ K + Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNENNLIVVDSL--TFAAPKTKEMIRVLNNLKVNGKTL 153
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_PHATR (50S ribosomal protein L4, chloroplastic OS=Phaeodactylum tricornutum GN=rpl4 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 6.580e-24 Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 3 Query: 198 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590 +VH+ LI ++R+ T+S+ TR EVRGGGRKP+ QK TG+AR GSNR+PL GGGV+FGPKP+ S+K+NKKE++L N +++E + PKTK F++ + ++ +Q L+V + Sbjct: 37 LVHKDLIRHFGSQRQATSSSKTRSEVRGGGRKPWRQKGTGKARAGSNRSPLWKGGGVIFGPKPKKISLKLNKKERQL--ALQTLIYNKKNNILIIENLETGMTEPKTKAFVKICQDCQINLEQKVLLVVTD 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MOOTA (50S ribosomal protein L4 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplD PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24 Identity = 58/157 (36.94%), Postives = 88/157 (56.05%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590 + + G+++GE LD + AV+H A++ + ++RRGTA+T +V GGGRKP+ QK TGRAR GS R+PL GG V+FGP+PRD+ ++ KK +RL N IV++E K E+P+TK+ ++ K + E Sbjct: 6 LYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGGGRKPWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRDGNIIVLDEL--KMEKPRTKDMAHILKNLNAENKALVVTATRE 160
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CALS8 (50S ribosomal protein L4 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplD PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24 Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 +P+ + G++IGE L+ V+H+A++ + N+R+GT + TR EVRGGGRKP+ QK TGRAR+GS R P GGVVF KPRD+SI + KK +RL N IV++++D + +TKE I ++ GL ++ A +++ E +E Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNLIVLDKWD--MNQYRTKEVIRVLKNLGLENEK-ALIVIPEKNE 162
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLPB (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplD PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23 Identity = 61/159 (38.36%), Postives = 94/159 (59.12%), Query Frame = 3 Query: 114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587 L +L+ G + GE L+ + + + ++ + + M N+R+GT R EVRGGGRKPY QK TG AR+GS R+PL GGG +FGP+PRD+ +K+NKK K+L +VVE+F F++ KT++ E ++ GL ++ TL++M Sbjct: 3 LKVLNTGGSETGEVVTLNDAVFSAEVSEHAMYLDVKSIMANRRQGTHKAKNRSEVRGGGRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANEGGIVVVEDF--VFDQIKTRQMAEVLKNLGLDSRK--TLMLM 157 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |