FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:413..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PELTS (50S ribosomal protein L4 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplD PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.466e-23
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKE 524
            GE++GE  L  +    +    V+H A++  + N+R GT  T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGG++FGP PRD+S  + +K +RL             + +V++E   K ++PKTKE
Sbjct:   11 GEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGGGRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNSGDILVLDEL--KLDQPKTKE 138          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ALKOO (50S ribosomal protein L4 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            I + +G+++ E  L       +     ++  +   + N+R+GT S  TR EVRGGGRKP+ QK TGRAR GS R+PL  GGG+VF PKPRD+S  I KK +RL               IV++E   K + PKTKE +  ++   +  K  A +++ E SE V
Sbjct:    6 IYNVSGQQVSEIELSENVFGVEVNEHAMYEVVKNQLANRRQGTQSAKTRAEVRGGGRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNELIVLDEL--KLDAPKTKEMVNILKNLNVDKK--ALIVMGEKSEAV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROA2 (50S ribosomal protein L4 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLL 581
            L +++  G + GE   LD K  A   +   V+  + + + NKR+GT     R EVRGGG+KPY QK TG AR+GS+R+ L  GGG +FGP+P  + +K+N+K KRL               IV+E+F   FE+ KT++F + ++  GL  K+   LL
Sbjct:    3 LKVINTAGAETGEVISLDDKVFAAKVSEHAVYLDVKSLLANKRQGTHKVKNRSEVRGGGKKPYRQKGTGHARQGSSRSGLMSGGGSIFGPQPHGYDLKVNRKIKRLARRSALSSKAGEGRIIVIEDF--TFEQIKTRQFADILKNLGLDQKKTLVLL 157          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESHY (50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain Y51) GN=rplD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569
            +++  G  +GE  LD      +    V+H+A++  + ++RRGT STL RGEVRGGGRKP+ QK TGRAR GS R+PL  GG V+FGPKPR +   + KK +RL            +  IV+E  D      KT+E ++ ++   +  K +
Sbjct:    6 VVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKLIVLE--DLSLNEAKTREMVKVLQALNVSKKAL 153          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_ODOSI (50S ribosomal protein L4, chloroplastic OS=Odontella sinensis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  123 LSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590
            +   G+ + + Y    +    +   ++H+ ++    ++R+GT ST TR EVRGGGRKP+ QK TGRAR GS+R+PL  GGGV+FGPKPR   +K+NKKE++L             N  +++  +   + PKTK F    +   ++  Q   ++V E
Sbjct:   12 VDINGKTLSDEYKLELNVLEKSGNYLIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKKERKL--ALQTLLYNKRNNISIIDNLETNLDLPKTKTFYSLCKNCEINLDQKILIIVGE 165          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAM 539
            + +  GE++GE  L  +    +    V+H A+   + N+R+GT  T TR EVRGGGRKP+ QK TGRAR GS+R+P+   GG+VFGP PRD++I + KK +RL            +N IV++      + PKTK+ +  +
Sbjct:    6 LYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRIL 143          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESHD (50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569
            +++  G  +GE  LD      +    V+H+A++  + ++RRGT STL RGEVRGGGRKP+ QK TGRAR GS R+PL  GG V+FGPKPR +   + KK +RL            +  IV+E  D      KT+E ++ ++   +  K +
Sbjct:    6 VVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKLIVLE--DLSLNEAKTREMVKVLQALNVGKKAL 153          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575
            G+K+G+  L  K    +  + V+H+ ++  + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P    GGVVF PKPRD+S+ I K  KR+               +++E  +   + PKTKE ++ +  +      I T
Sbjct:   11 GQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFNAKKTLIVT 155          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOPH (50S ribosomal protein L4 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEF 527
            + +  G+++G   L+      +    ++H A+++ + NKR+GT S  TR EV GGGRKP+ QK TG AR+GS R+P   GGGVVF PKPRD+S K+N+KEK L            +  IV++  +   +  KTK+F
Sbjct:    6 VYNIEGKEVGSLELNDAIFGVEVNEHLMHMAVVSQLANKRQGTQSAKTRAEVSGGGRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEAQKLIVLDSMN--MDEIKTKKF 139          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ALKMQ (50S ribosomal protein L4 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 61/162 (37.65%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            + + +G+K+ E  L       +    V++ A+   + NKR+GT S  TR EVRGGGRKP+ QK TGRAR G+ R+PL  GGG VF PKPRD S  + +K KRL            E  +V++E     + PKTK+ +  ++   L+  +   L+V E +E +
Sbjct:    6 VYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGGGRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNNEELLVLDEL--SLDTPKTKDMVNILK--NLNADKKVLLVVGEKNEAI 163          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PELTS1.466e-2343.8550S ribosomal protein L4 OS=Pelotomaculum thermopr... [more]
RL4_ALKOO1.914e-2338.8950S ribosomal protein L4 OS=Alkaliphilus oremlandi... [more]
RL4_PROA22.500e-2338.8550S ribosomal protein L4 OS=Prosthecochloris aestu... [more]
RL4_DESHY2.500e-2339.3350S ribosomal protein L4 OS=Desulfitobacterium haf... [more]
RK4_ODOSI2.500e-2335.9050S ribosomal protein L4, chloroplastic OS=Odontel... [more]
RL4_DESRM3.266e-2340.0050S ribosomal protein L4 OS=Desulfotomaculum reduc... [more]
RL4_DESHD3.266e-2339.3350S ribosomal protein L4 OS=Desulfitobacterium haf... [more]
RL4_CLOTE3.266e-2338.7850S ribosomal protein L4 OS=Clostridium tetani GN=... [more]
RL4_CLOPH9.501e-2340.4450S ribosomal protein L4 OS=Clostridium phytoferme... [more]
RL4_ALKMQ9.501e-2337.6550S ribosomal protein L4 OS=Alkaliphilus metallire... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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