FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PELTS (50S ribosomal protein L4 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplD PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.466e-23 Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKE 524 GE++GE L + + V+H A++ + N+R GT T TR EVRGGGRKP+ QK TGRAR GS R+PL GGG++FGP PRD+S + +K +RL + +V++E K ++PKTKE Sbjct: 11 GEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGGGRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNSGDILVLDEL--KLDQPKTKE 138
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ALKOO (50S ribosomal protein L4 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplD PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23 Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 I + +G+++ E L + ++ + + N+R+GT S TR EVRGGGRKP+ QK TGRAR GS R+PL GGG+VF PKPRD+S I KK +RL IV++E K + PKTKE + ++ + K A +++ E SE V Sbjct: 6 IYNVSGQQVSEIELSENVFGVEVNEHAMYEVVKNQLANRRQGTQSAKTRAEVRGGGRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNELIVLDEL--KLDAPKTKEMVNILKNLNVDKK--ALIVMGEKSEAV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROA2 (50S ribosomal protein L4 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplD PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23 Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = 3 Query: 114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLL 581 L +++ G + GE LD K A + V+ + + + NKR+GT R EVRGGG+KPY QK TG AR+GS+R+ L GGG +FGP+P + +K+N+K KRL IV+E+F FE+ KT++F + ++ GL K+ LL Sbjct: 3 LKVINTAGAETGEVISLDDKVFAAKVSEHAVYLDVKSLLANKRQGTHKVKNRSEVRGGGKKPYRQKGTGHARQGSSRSGLMSGGGSIFGPQPHGYDLKVNRKIKRLARRSALSSKAGEGRIIVIEDF--TFEQIKTRQFADILKNLGLDQKKTLVLL 157
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESHY (50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain Y51) GN=rplD PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23 Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569 +++ G +GE LD + V+H+A++ + ++RRGT STL RGEVRGGGRKP+ QK TGRAR GS R+PL GG V+FGPKPR + + KK +RL + IV+E D KT+E ++ ++ + K + Sbjct: 6 VVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKLIVLE--DLSLNEAKTREMVKVLQALNVSKKAL 153
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RK4_ODOSI (50S ribosomal protein L4, chloroplastic OS=Odontella sinensis GN=rpl4 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23 Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = 3 Query: 123 LSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590 + G+ + + Y + + ++H+ ++ ++R+GT ST TR EVRGGGRKP+ QK TGRAR GS+R+PL GGGV+FGPKPR +K+NKKE++L N +++ + + PKTK F + ++ Q ++V E Sbjct: 12 VDINGKTLSDEYKLELNVLEKSGNYLIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKKERKL--ALQTLLYNKRNNISIIDNLETNLDLPKTKTFYSLCKNCEINLDQKILIIVGE 165
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23 Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAM 539 + + GE++GE L + + V+H A+ + N+R+GT T TR EVRGGGRKP+ QK TGRAR GS+R+P+ GG+VFGP PRD++I + KK +RL +N IV++ + PKTK+ + + Sbjct: 6 LYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRIL 143
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESHD (50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplD PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23 Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569 +++ G +GE LD + V+H+A++ + ++RRGT STL RGEVRGGGRKP+ QK TGRAR GS R+PL GG V+FGPKPR + + KK +RL + IV+E D KT+E ++ ++ + K + Sbjct: 6 VVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKLIVLE--DLSLNEAKTREMVKVLQALNVGKKAL 153
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23 Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575 G+K+G+ L K + + V+H+ ++ + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P GGVVF PKPRD+S+ I K KR+ +++E + + PKTKE ++ + + I T Sbjct: 11 GQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFNAKKTLIVT 155
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOPH (50S ribosomal protein L4 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23 Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEF 527 + + G+++G L+ + ++H A+++ + NKR+GT S TR EV GGGRKP+ QK TG AR+GS R+P GGGVVF PKPRD+S K+N+KEK L + IV++ + + KTK+F Sbjct: 6 VYNIEGKEVGSLELNDAIFGVEVNEHLMHMAVVSQLANKRQGTQSAKTRAEVSGGGRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEAQKLIVLDSMN--MDEIKTKKF 139
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ALKMQ (50S ribosomal protein L4 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23 Identity = 61/162 (37.65%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 + + +G+K+ E L + V++ A+ + NKR+GT S TR EVRGGGRKP+ QK TGRAR G+ R+PL GGG VF PKPRD S + +K KRL E +V++E + PKTK+ + ++ L+ + L+V E +E + Sbjct: 6 VYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGGGRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNNEELLVLDEL--SLDTPKTKDMVNILK--NLNADKKVLLVVGEKNEAI 163 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |