FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_OCEIH (50S ribosomal protein L4 OS=Oceanobacillus iheyensis GN=rplD PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 8.043e-22 Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 +L G +G+ L+ + V+H A++ + R+GT + R EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR +S K+ KK +RL E+ +V+E + PKTKE + ++ GL A +++ E E V Sbjct: 6 LLKQDGSNVGDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENI--SIDAPKTKEIVNILK--GLQVDAKALIVLSEKDETV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_GEOSW (50S ribosomal protein L4 OS=Geobacillus sp. (strain WCH70) GN=rplD PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.050e-21 Identity = 62/158 (39.24%), Postives = 86/158 (54.43%), Query Frame = 3 Query: 132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 +GE IGE L+ + + V+ A+I + R+GT T R EV GGGRKP+ QK TGRAR+GS R P GGG VFGP PR +S K+ KK +RL N +V++ E PKTKE ++ + + K A ++ +V+ENV Sbjct: 10 SGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNIVVLDNL--TLEAPKTKEMVKILNNLSVDRK--ALIVTDDVNENV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACHD (50S ribosomal protein L4 OS=Bacillus halodurans GN=rplD PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.050e-21 Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 G ++G+ L + V+H A++ + R+GT T TR EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR +S K+ KK +RL E +V+E E PKTKE + GL + A ++ + ++NV Sbjct: 11 GSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKAEEIVVLESL--ALEAPKTKEMASILS--GLSVDRKALVVTADYNDNV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LACSS (50S ribosomal protein L4 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplD PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.372e-21 Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATL 578 G + G L+ A + VV A+I + R+GT + R VRGGGRKP+ QK TGRAR+GS R+P GGGVVFGP PR +S K+ +K +RL + IVV+ F F+ PKTKEF E + + ++ K + L Sbjct: 11 GSQNGNVELNDSIWAIEPNENVVFDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVIDNDLIVVDSF--SFDAPKTKEFAEVLNKLDVNTKVLVVL 156
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOBB (50S ribosomal protein L4 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplD PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.372e-21 Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575 G+++G+ L+ + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GG+VF PKPRD+ + I K +R+ +V+E FE PKTK+FIE + + I T Sbjct: 11 GKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVNDGQMVVLESL--SFEAPKTKQFIEMLSAFNAKKTLIIT 155
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOBA (50S ribosomal protein L4 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplD PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.372e-21 Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575 G+++G+ L+ + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GG+VF PKPRD+ + I K +R+ +V+E FE PKTK+FIE + + I T Sbjct: 11 GKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVNDGQMVVLESL--SFEAPKTKQFIEMLSAFNAKKTLIIT 155
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LYSSC (50S ribosomal protein L4 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplD PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21 Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 +LS TG +GE L+ + AV+ A++ + R+G R EV GGGRKP+ QK TGRAR+GS R+P GGG+VFGP PR +S K+ KK +RL +N +V++ PKTKEF + ++ L K + + ++ ENV Sbjct: 6 VLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDAL--TLAAPKTKEFTKILKDLSLEKKSL--FVTADLDENV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_HELMI (50S ribosomal protein L4 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplD PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21 Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 G ++GE L+ + AV+H+A++T + RRGT +RGEV GGG+KP+ QK TGRAR G++R+PL GG ++FGP+PR + I + KK +RL N IVV+ + + PKTK + + L ++ A L+ ++ E V Sbjct: 11 GAQVGEIELNDAIFGIEPNEAVMHQAVVTQLAAWRRGTHKVKSRGEVSGGGKKPWRQKGTGRARAGTSRSPLWRGGAIIFGPQPRSYKIAMPKKVRRLALKSALSDKVRSGNLIVVDALE--MDAPKTKVIAGILNK--LKVERKALLVTADIDETV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLT3 (50S ribosomal protein L4 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplD PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21 Identity = 57/127 (44.88%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 225 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 M N+ +GT TR EV GGGRKPY QK TG ARRGS+R+P+ GGG +FGPKP D+ + INKK KRL IV+E++ KTKE + ++ GL+ K+ TLL+M +V Sbjct: 41 MANQHQGTHKVKTRSEVSGGGRKPYRQKGTGNARRGSSRSPVMIGGGAIFGPKPHDYVVGINKKMKRLARISALSYKAKNNEIIVMEDYVP--SEIKTKEVVSFLKSLGLNEKK--TLLLMPSKNDV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACWK (50S ribosomal protein L4 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplD PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21 Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3 Query: 132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 TG ++GE L + AV+ A++ + R+GT TR EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR ++ K+ KK +RL N +V+E D PKTK+ + ++ GL ++ A ++ + +E+V Sbjct: 10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMVAVLK--GLTVEKKALIVTADANESV 163 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |