FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:413..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_OCEIH (50S ribosomal protein L4 OS=Oceanobacillus iheyensis GN=rplD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.043e-22
Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            +L   G  +G+  L+      +    V+H A++    + R+GT +   R EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR +S K+ KK +RL            E+ +V+E      + PKTKE +  ++  GL     A +++ E  E V
Sbjct:    6 LLKQDGSNVGDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENI--SIDAPKTKEIVNILK--GLQVDAKALIVLSEKDETV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_GEOSW (50S ribosomal protein L4 OS=Geobacillus sp. (strain WCH70) GN=rplD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.050e-21
Identity = 62/158 (39.24%), Postives = 86/158 (54.43%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            +GE IGE  L+      +  + V+  A+I    + R+GT  T  R EV GGGRKP+ QK TGRAR+GS R P   GGG VFGP PR +S K+ KK +RL             N +V++      E PKTKE ++ +    +  K  A ++  +V+ENV
Sbjct:   10 SGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNIVVLDNL--TLEAPKTKEMVKILNNLSVDRK--ALIVTDDVNENV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACHD (50S ribosomal protein L4 OS=Bacillus halodurans GN=rplD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.050e-21
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            G ++G+  L       +    V+H A++    + R+GT  T TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR +S K+ KK +RL            E  +V+E      E PKTKE    +   GL   + A ++  + ++NV
Sbjct:   11 GSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKAEEIVVLESL--ALEAPKTKEMASILS--GLSVDRKALVVTADYNDNV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LACSS (50S ribosomal protein L4 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.372e-21
Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATL 578
            G + G   L+    A +    VV  A+I    + R+GT +   R  VRGGGRKP+ QK TGRAR+GS R+P   GGGVVFGP PR +S K+ +K +RL             + IVV+ F   F+ PKTKEF E + +  ++ K +  L
Sbjct:   11 GSQNGNVELNDSIWAIEPNENVVFDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVIDNDLIVVDSF--SFDAPKTKEFAEVLNKLDVNTKVLVVL 156          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOBB (50S ribosomal protein L4 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.372e-21
Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575
            G+++G+  L+      +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GG+VF PKPRD+ + I K  +R+               +V+E     FE PKTK+FIE +  +      I T
Sbjct:   11 GKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVNDGQMVVLESL--SFEAPKTKQFIEMLSAFNAKKTLIIT 155          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CLOBA (50S ribosomal protein L4 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.372e-21
Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575
            G+++G+  L+      +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GG+VF PKPRD+ + I K  +R+               +V+E     FE PKTK+FIE +  +      I T
Sbjct:   11 GKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVNDGQMVVLESL--SFEAPKTKQFIEMLSAFNAKKTLIIT 155          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LYSSC (50S ribosomal protein L4 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21
Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            +LS TG  +GE  L+      +   AV+  A++    + R+G      R EV GGGRKP+ QK TGRAR+GS R+P   GGG+VFGP PR +S K+ KK +RL            +N +V++        PKTKEF + ++   L  K +   +  ++ ENV
Sbjct:    6 VLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDAL--TLAAPKTKEFTKILKDLSLEKKSL--FVTADLDENV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_HELMI (50S ribosomal protein L4 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            G ++GE  L+      +   AV+H+A++T +   RRGT    +RGEV GGG+KP+ QK TGRAR G++R+PL  GG ++FGP+PR + I + KK +RL             N IVV+  +   + PKTK     + +  L  ++ A L+  ++ E V
Sbjct:   11 GAQVGEIELNDAIFGIEPNEAVMHQAVVTQLAAWRRGTHKVKSRGEVSGGGKKPWRQKGTGRARAGTSRSPLWRGGAIIFGPQPRSYKIAMPKKVRRLALKSALSDKVRSGNLIVVDALE--MDAPKTKVIAGILNK--LKVERKALLVTADIDETV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLT3 (50S ribosomal protein L4 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21
Identity = 57/127 (44.88%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  225 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            M N+ +GT    TR EV GGGRKPY QK TG ARRGS+R+P+  GGG +FGPKP D+ + INKK KRL               IV+E++       KTKE +  ++  GL+ K+  TLL+M    +V
Sbjct:   41 MANQHQGTHKVKTRSEVSGGGRKPYRQKGTGNARRGSSRSPVMIGGGAIFGPKPHDYVVGINKKMKRLARISALSYKAKNNEIIVMEDYVP--SEIKTKEVVSFLKSLGLNEKK--TLLLMPSKNDV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACWK (50S ribosomal protein L4 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++ A ++  + +E+V
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMVAVLK--GLTVEKKALIVTADANESV 163          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_OCEIH8.043e-2237.0450S ribosomal protein L4 OS=Oceanobacillus iheyens... [more]
RL4_GEOSW1.050e-2139.2450S ribosomal protein L4 OS=Geobacillus sp. (strai... [more]
RL4_BACHD1.050e-2138.8550S ribosomal protein L4 OS=Bacillus halodurans GN... [more]
RL4_LACSS1.372e-2140.5450S ribosomal protein L4 OS=Lactobacillus sakei su... [more]
RL4_CLOBB1.372e-2138.1050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_CLOBA1.372e-2138.1050S ribosomal protein L4 OS=Clostridium botulinum ... [more]
RL4_LYSSC2.340e-2137.0450S ribosomal protein L4 OS=Lysinibacillus sphaeri... [more]
RL4_HELMI2.340e-2136.9450S ribosomal protein L4 OS=Heliobacterium modesti... [more]
RL4_CHLT32.340e-2144.8850S ribosomal protein L4 OS=Chloroherpeton thalass... [more]
RL4_BACWK2.340e-2137.9750S ribosomal protein L4 OS=Bacillus weihenstephan... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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