FC920841

Overview
NameFC920841
Unique NameFC920841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NTRK1_HUMAN (High affinity nerve growth factor receptor OS=Homo sapiens GN=NTRK1 PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 69/212 (32.55%), Postives = 96/212 (45.28%), Query Frame = 3
Query:  120 LAEGGFVSVH----RGVLP--DGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRD-------------PLEWSARRKIAVGAARGLRYLHEECRVGC-IVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            L EG F  V       +LP  D  +VAVK  K AS    Q+F  E E+L+  QH+++V   G C E    L+V+EY+ +G L+  L     D             PL       +A   A G+ YL      G   VHRD+   N LV       +GDFG++R     D   V  R +    ++ PE     + T ++DV+S GVVL E+ T
Sbjct:  516 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL-----AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 722          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: JAK2_HUMAN (Tyrosine-protein kinase JAK2 OS=Homo sapiens GN=JAK2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 56/179 (31.28%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  168 GQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRR--LLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLG--TFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            G+VVAVK+ + ++ +  ++F  E+E+L   QH N+V   G C   GRR   L+ EY+  GSL  +L  + ++ ++     +      +G+ YL  +      +HRD+   NILV ++    +GDFGL +  P      + +  G     + APE     + +  +DV+S GVVL EL T
Sbjct:  876 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK----RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 1049          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: CST1_CAEEL (Serine/threonine-protein kinase cst-1 OS=Caenorhabditis elegans GN=cst-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPD-GQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            L EG + SVH+ +  + G V+A+K+  + +    QE   E+ ++   + + VV   G   +     +V EY   GS+   +  R R PL       +     +GL+YLH+  ++    HRD++  NIL+  D    + DFG+A    D  M     V+GT  ++APE  +      KAD++SLG+  +E+  GR
Sbjct:   41 LGEGSYGSVHKAIHRESGHVLAIKKVPVDTDL--QEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRAR-RKPLSEQEISAVLRDTLKGLQYLHDLKKI----HRDIKAGNILLNTDGIAKLADFGVAGQLTD-TMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGR 226          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: ZYG1_CAEBR (Probable serine/threonine-protein kinase zyg-1 OS=Caenorhabditis briggsae GN=zyg-1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 62/202 (30.69%), Postives = 99/202 (49.01%), Query Frame = 3
Query:  102 FSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLV----GDFGLARWQPDGDMGVETRVLGTFGYLAPE-YAQSGQITEKADVYSLGVVLVELIT 692
            F     + +GGF  V+     +G+ VA+K+   A+SQ       E++ +   +HRN+V       E+G   LV E    GSL    Y + + PL+ S    I       ++Y+H+E     I+HRD+   N+ +    +  +    GDFGLA     G  G    ++GT G++AP+ + Q+    + ADVYSLG VL  ++T
Sbjct:   13 FQNLQQIGQGGFGVVYSAQRENGEKVAIKKIGNAASQ--TRIKEEIKTMKLLRHRNIVQFYETFFENGETYLVMELCEGGSLMD--YVKQKGPLDDSTAVHILRQLIAAVKYIHDE----NILHRDLSAGNVFIKDATKSTITVKLGDFGLA--TNLGQHGTACTIVGTPGFIAPQVFGQN--YDQAADVYSLGAVLYTMLT 202          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: PHO85_CANGA (Negative regulator of the PHO system OS=Candida glabrata GN=PHO85 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 61/214 (28.50%), Postives = 103/214 (48.13%), Query Frame = 3
Query:   87 LATNRFSEANFLAEGGFVSVHRGVLPD-GQVVAVKQYKLASSQGDQEFC-SEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGS---LDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLG----TFGYLAPEYAQ-SGQITEKADVYSLGVVLVELITGR 698
            +++++F +   L  G + +V++G+    G  VA+K+ KL S +G       E+ ++   +H N+V L      + +  LV+EY+ N     +DS   G     LE +  +        GL + HE      I+HRD++P N+L+T   +  +GDFGLAR       G+          T  Y AP+    S   +   D++S G +L E+ITG+
Sbjct:    1 MSSSQFKQLEKLGNGTYATVYKGLNKSTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHDNIVRLYDVIHTENKLTLVFEYMDNDLKKYMDSRTVGNAPRGLEMNLVKYFQWQLLEGLAFCHENK----ILHRDLKPQNLLITKRGQLKLGDFGLAR-----AFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGK 205          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NTRK1_MOUSE (High affinity nerve growth factor receptor OS=Mus musculus GN=Ntrk1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 61/190 (32.11%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  165 DGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRD-------------PLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            D  +VAVK  K AS    Q+F  E E+L+  QH+++V   G C E G  L+V+EY+ +G L+  L     D             PL       +A   A G+ YL         VHRD+   N LV       +GDFG++R     D   V  R +    ++ PE     + + ++DV+S GVVL E+ T
Sbjct:  540 DKMLVAVKALKEASENARQDFQREAELLTMLQHQHIVRFFGVCTEGGPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLASL----HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFSTESDVWSFGVVLWEIFT 725          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: CC2H3_TRYBB (Cell division control protein 2 homolog 3 OS=Trypanosoma brucei brucei GN=CRK3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 67/205 (32.68%), Postives = 100/205 (48.78%), Query Frame = 3
Query:   96 NRFSEANFLAEGGFVSVHRGV-LPDGQVVAVKQYKL-ASSQG-DQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQ-ITEKADVYSLGVVLVELITGR 698
            +R++  + L EG +  V+R V    GQ+VA+K+ +L  + +G  Q    EV +L    H N+V L+     DG+  L++EY+ +  L   L  R       +  +KI      GL + H       IVHRD++P NILVT D    + DFGLAR      M   T  + T  Y APE     +  T   D++S+G +  EL  G+
Sbjct:   21 DRYNRMDILGEGTYGVVYRAVDRATGQIVALKKVRLDRTDEGIPQTALREVSILQEIHHPNIVNLLDVICADGKLYLIFEYV-DHDLKKALEKRG-GAFTGTTLKKIIYQLLEGLSFCHRHR----IVHRDLKPANILVTTDNSVKIADFGLAR-AFQIPMHTYTHEVVTLWYRAPEILLGEKHYTPAVDMWSIGCIFAELARGK 218          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RAF1_XENLA (RAF proto-oncogene serine/threonine-protein kinase OS=Xenopus laevis GN=raf1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 71/234 (30.34%), Postives = 115/234 (49.15%), Query Frame = 3
Query:   18 STCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGS-LDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLA----RWQPDGDMGVETRVLGTFGYLAPEYAQ---SGQITEKADVYSLGVVLVELITG 695
            ST Q K  +     R  +Y   E+  +    ++ +  G F +V++G       V + +    + +  Q F +EV VL   +H N+++ +G+  +D   L +    C GS L  HL+  D    +      IA   A+G+ YLH +     I+HRDM+ NNI +       +GDFGLA    RW   G   VE ++ G+  ++APE  +   +   + ++DVYS G+VL EL+TG
Sbjct:  313 STGQEKNKIRARGQRDSSYY-WEIIASEVMLSSRIGSGSFGTVYKGKWHGDVAVKILKVTDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDN--LAIVTQWCEGSSLYYHLHVLDTK-FQMFQLIDIARQTAQGMDYLHAKN----IIHRDMKSNNIFLHEGLTVKIGDFGLATVKTRW--SGSQQVE-QLTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTG 535          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RAF1_CHICK (RAF proto-oncogene serine/threonine-protein kinase OS=Gallus gallus GN=RAF1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGS-LDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLA----RWQPDGDMGVETRVLGTFGYLAPEYAQ---SGQITEKADVYSLGVVLVELITG 695
            +  G F +V++G       V + +    + +  Q F +EV VL   +H N+++ +G+  +D   L +    C GS L  HL+ ++    +      IA   A+G+ YLH +     I+HRDM+ NNI +       +GDFGLA    RW   G   VE +  G+  ++APE  +   S   + ++DVYS G+VL EL+TG
Sbjct:  355 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDN--LAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDYLHAKN----IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW--SGSQQVE-QPTGSILWMAPEVIRMQDSNPFSFQSDVYSYGIVLYELMTG 544          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NTRK2_RAT (BDNF/NT-3 growth factors receptor OS=Rattus norvegicus GN=Ntrk2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 74/247 (29.96%), Postives = 107/247 (43.32%), Query Frame = 3
Query:   33 KAPVFGNPPRWFTYAELELATNRFSE---------ANFLAEGGFVSVHRGVL------PDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRD-----------PLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            K PV  NP ++F     +L  + F +            L EG F  V            D  +VAVK  K AS    ++F  E E+L+  QH ++V   G CVE    ++V+EY+ +G L+  L     D            L  S    IA   A G+ YL  +      VHRD+   N LV  +    +GDFG++R     D   V    +    ++ PE     + T ++DV+SLGVVL E+ T
Sbjct:  506 KIPVIENP-QYFGITNSQLKPDTFVQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ----HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT 747          
The following BLAST results are available for this feature:
BLAST of FC920841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NTRK1_HUMAN4.292e-1532.55High affinity nerve growth factor receptor OS=Homo... [more]
JAK2_HUMAN4.292e-1531.28Tyrosine-protein kinase JAK2 OS=Homo sapiens GN=JA... [more]
CST1_CAEEL4.292e-1529.90Serine/threonine-protein kinase cst-1 OS=Caenorhab... [more]
ZYG1_CAEBR5.605e-1530.69Probable serine/threonine-protein kinase zyg-1 OS=... [more]
PHO85_CANGA5.605e-1528.50Negative regulator of the PHO system OS=Candida gl... [more]
NTRK1_MOUSE5.605e-1532.11High affinity nerve growth factor receptor OS=Mus ... [more]
CC2H3_TRYBB5.605e-1532.68Cell division control protein 2 homolog 3 OS=Trypa... [more]
RAF1_XENLA7.321e-1530.34RAF proto-oncogene serine/threonine-protein kinase... [more]
RAF1_CHICK9.561e-1532.00RAF proto-oncogene serine/threonine-protein kinase... [more]
NTRK2_RAT9.561e-1529.96BDNF/NT-3 growth factors receptor OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC32013F10EF RVDevelop1 Citrus clementina cDNA clone C32013F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920841 ID=FC920841; Name=FC920841; organism=Citrus clementina; type=EST; length=698bp
GTCCTCCTCCATTGTGTTCAACATGTCAGCACAAGGCACCTGTATTTGGT
AATCCTCCGAGGTGGTTCACCTATGCTGAATTGGAGCTTGCTACAAATAG
ATTTTCAGAAGCAAATTTCTTAGCCGAAGGTGGATTTGTGTCTGTTCACC
GAGGTGTTCTACCAGATGGCCAGGTTGTTGCCGTCAAGCAATATAAATTG
GCTAGTTCTCAAGGTGATCAAGAATTTTGCTCAGAAGTTGAGGTTTTAAG
TTGTGCACAACATCGCAATGTTGTGATGTTGATTGGATTCTGTGTGGAGG
ATGGGAGGAGATTGCTGGTTTATGAGTATATTTGCAATGGGTCCTTGGAT
TCCCATCTTTATGGACGTGATCGAGATCCACTGGAATGGTCTGCAAGGCG
AAAAATTGCGGTTGGAGCAGCTCGAGGGTTGCGATACCTTCATGAAGAAT
GTAGAGTGGGTTGTATCGTCCACCGTGATATGCGCCCTAACAACATTCTG
GTCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGACTAGCAAGATG
GCAACCAGATGGAGATATGGGAGTGGAAACAAGAGTACTCGGAACATTTG
GGTATTTAGCTCCAGAATATGCTCAGAGTGGTCAAATCACAGAAAAAGCT
GACGTCTATTCCCTTGGGGTAGTATTGGTGGAGCTCATTACNGGAAGG
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